Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0856 ATGGTGAGGGAGAAGATAAAGATAAAGAAGATAGACAACATAACTGCAAGACAAGTGACCTTCTCCAAAAGGAGAAGAGGTCTGTTTAAGAAAGCCGAGGAGCTTTCTGTTCTTTGCGATGCTGAAGTTGCTCTTATTATCTTCTCCAACACTGGAAAGCTCTCTGAATTTTCTAGCAGCAGTATGAGAAACGTACTTGCAAGGTACTATCTCCATTCAAGTAGCGACCCAAAATTGGACCAACCATCTCTTGAGCTCCAACTGGATATTAGCAATCATGTCAGATTGAGTGAGGAAATATCAGAAAAGAGCTACCAGTTAAGGCAGCTAAAAGGAGAGGATCTTCAAGGACTAAATGTAGAAGAACTGCAGAAATTGGAGAAAATGCTTGAAGCTGGACTTAGCCGCGTAGTCTCTACTAAGGAAGACCGTATAATGAATGAGATCTCTGCCCTTGAGGTTAAGGGAGCTGAGTTGATAGAAGAGAATAGGAGACTGAAACAGAAGATGTCGAGGCTGTCTAGATTGAGAAGAACGAAGATTGTGATCGAGCAAGTAGGGCTCGACCCCGGAAATAAGGAAGATGGGGTGTCGTCGGATCAGTCGGCAGTCATTAATGCCAGTAGTTGCACTAGTTCATGCCCCCCTGTTGAGGATGATAACTCTGATACAATCTCTCTCAGATTAGGGCTTCCCTTTTCCAACTGA 708 43.5 MVREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSNTGKLSEFSSSSMRNVLARYYLHSSSDPKLDQPSLELQLDISNHVRLSEEISEKSYQLRQLKGEDLQGLNVEELQKLEKMLEAGLSRVVSTKEDRIMNEISALEVKGAELIEENRRLKQKMSRLSRLRRTKIVIEQVGLDPGNKEDGVSSDQSAVINASSCTSSCPPVEDDNSDTISLRLGLPFSN 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6546748 6550582 + Conep07aG0088500.1 Cone7ag0856 441452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0856 235 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag0856 235 SUPERFAMILY SRF-like 3 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag0856 235 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag0856 235 CDD MADS_MEF2_like 12 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone7ag0856 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag0856 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag0856 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag0856 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag0856 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag0856 235 Pfam K-box region 93 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone7ag0856 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag0856 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 198 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone7ag0856 235 Coils Coil 149 179 - -
Cone7ag0856 235 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone7ag0856 235 FunFam Transcription factor, MADS-box 13 83 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0994 Cone-Chr12:8469668 Cone7ag0856 Cone-Chr7:6546748 3.39E-45 dispersed
Cone17ag1176 Cone-Chr17:8627228 Cone7ag0856 Cone-Chr7:6546748 4.09E-72 dispersed
Cone7ag0856 Cone-Chr7:6546748 Cone8ag1021 Cone-Chr8:9485806 1.05E-47 dispersed
Cone7ag0856 Cone-Chr7:6546748 Cone7ag0857 Cone-Chr7:6560360 1.14E-38 tandem
Cone20ag0555 Cone-Chr20:3087265 Cone7ag0856 Cone-Chr7:6546748 3.10E-74 wgd
Cone4ag1298 Cone-Chr4:10714434 Cone7ag0856 Cone-Chr7:6546748 1.02E-121 wgd
Cone6ag1530 Cone-Chr6:12035959 Cone7ag0856 Cone-Chr7:6546748 3.03E-63 wgd
Cone7ag0856 Cone-Chr7:6546748 Cone9ag1445 Cone-Chr9:10720623 5.38E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46503 PF00076 RRM_1 3.20E-20 CL0221 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0856 - - - 0.0