Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0862 ATGCCTGTCAACGATGGCTTTCAAGCTGTATCAAATTGCTATGTATTCAAGAGCCGATTGCAAGAGTATGCACAGAAATTGGGACTGCTTACACCTGTTTATCAAACTATTAAAGAGGGTCCATCCCACGAGCCATTATTCCGGTCAACAGTGATATTGAAAGATGATAGATATGAGTCCTTGACTGGATTTCTTAACCGTAAGGCAGCTGAGCAGTCAGCTGCTGAAGTTGCTCTCATGGAGTTGTCAAAGTCCTCTGCTATCAATCAAGGCATCTCTCAACCTGTTCATGAGACTGGACTCTGCAAAAATCTTCTCCAGGAATACGCTCAAAAGATGAACTATGCAATACCCTTATATGAGTGCCAAAAAGACGAAAGCCCAGGCCGACATAACTATTTCTCATGTACCATAGAAATTGGGGGGATTCGATATATTGGAGCAGCAGCAAGAACAAAGAAAGAAGCAGAAATCAAAGCAGCTAGAACTGCTTTATTAGCTATCAGGTCTACCCCCTCTGAGTTGTCTGGAACACCCATTATTCAAACTAACCTGACCGTAGTTCCATCCAAGAAAAGAATGGTAGAATTGGTTTCAAATCATCAAGAAACTGCAAATACTCCAAAGCCGAAGAAACAACAGTTCAAAAAGAAGGCACAGAAAAAGAAACCCTCTCGCAAAAAGGCTAAAAAACCTCCTCAGGCAGAGACGAATAATGCATTCTACTCTACAACATATATGGATGAAGTTCTGGTAGCCAATTTGGTTTCACATGCAATGCAAACCGGAGAAGTAGAGTCTGCGTCTCTAGTTAGGGAAGCCATGAATAGTCCGACGGCCGATATTAACTCGAGTGAGAGAGATACATCACAGAATGAGGAAAACAGTCCCTTCCCATTCCATCTCAATGGGTATTTAACAAATCCTCAATACAGTGCTTTAAATCCAATCCAAGGAGAAAACGAAATCTTTCATCAGATTGCATCTTCATTGTATTGTGAAGATGTCATTGCTTTTGGCACAGAAGTGAGTAAGGTTTCTGAAGTGGGAGAGATGGCTCCATCCATGGATGCAATAGAGGGTTAG 1086 41.71 MPVNDGFQAVSNCYVFKSRLQEYAQKLGLLTPVYQTIKEGPSHEPLFRSTVILKDDRYESLTGFLNRKAAEQSAAEVALMELSKSSAINQGISQPVHETGLCKNLLQEYAQKMNYAIPLYECQKDESPGRHNYFSCTIEIGGIRYIGAAARTKKEAEIKAARTALLAIRSTPSELSGTPIIQTNLTVVPSKKRMVELVSNHQETANTPKPKKQQFKKKAQKKKPSRKKAKKPPQAETNNAFYSTTYMDEVLVANLVSHAMQTGEVESASLVREAMNSPTADINSSERDTSQNEENSPFPFHLNGYLTNPQYSALNPIQGENEIFHQIASSLYCEDVIAFGTEVSKVSEVGEMAPSMDAIEG 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6601170 6603771 + Conep07aG0089100.1 Cone7ag0862 441458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0862 361 MobiDBLite consensus disorder prediction 211 229 - -
Cone7ag0862 361 SUPERFAMILY dsRNA-binding domain-like 103 171 - -
Cone7ag0862 361 PANTHER RIBONUCLEASE III 8 345 - GO:0003725(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0006396(PANTHER)|GO:0010468(PANTHER)
Cone7ag0862 361 Gene3D - 98 170 - -
Cone7ag0862 361 FunFam Double-stranded RNA-binding protein 1 95 170 - -
Cone7ag0862 361 CDD DSRM_AtDRB-like_rpt1 15 83 IPR044450 GO:0003725(InterPro)
Cone7ag0862 361 MobiDBLite consensus disorder prediction 200 240 - -
Cone7ag0862 361 Gene3D - 16 97 - -
Cone7ag0862 361 SUPERFAMILY dsRNA-binding domain-like 16 85 - -
Cone7ag0862 361 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 15 84 IPR014720 -
Cone7ag0862 361 Pfam Double-stranded RNA binding motif 17 81 IPR014720 -
Cone7ag0862 361 Pfam Double-stranded RNA binding motif 103 166 IPR014720 -
Cone7ag0862 361 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 101 170 IPR014720 -
Cone7ag0862 361 SMART DRBM_3 102 169 IPR014720 -
Cone7ag0862 361 SMART DRBM_3 16 83 IPR014720 -
Cone7ag0862 361 MobiDBLite consensus disorder prediction 274 302 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0862 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1194 Cone-Chr4:10069860 Cone7ag0862 Cone-Chr7:6601170 6.82E-19 dispersed
Cone4ag1293 Cone-Chr4:10684318 Cone7ag0862 Cone-Chr7:6601170 1.05E-210 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g526 . . Bda01g00907 . . . . . . . . . . . . . . . . . . . . . Cla08g01158 Cam08g1618 Cec08g1193 Cco08g1316 Clacu08g1317 . Cre08g1102 Cone4ag1293 Cone7ag0862 . . . . . Cme03g01812 . . . . Bpe02g01145 . . . . . . . Cma05g00538 Car05g00485 . Cpe11g00474 . . . . . . . . . . . . . . . . . Chy03g01315 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012839 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 0 1 1 1 1 0 1 1 1 1 27