Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0863 ATGCACGGGCGCCCTCGCGTACCTCAAAACCCAGAAGATGAGGGAGTTTTAGCGGCCAAAGCTCAGAAGCTACGTTCCCTCCAATCTCAGCTCCTCTCCAACCACCATTCCAAGATTTATACGAAGGAAGCTCTGGAGGTCAGCGCGAAGCTCTTGGAGATCAATCCGGAGTCGTACACCGCTTGGAACTTTAGGAAGCTCGCCGTCCAACATTCTCTGACTCGATCTGAATCCGATGATCCTGATTCAGTCAAAGCGATTCTCAATGACGAACTAAGAGTGGTGGAGAATGCTTTGAAGCAGAACTTTAAGTCCTATGGAGCTTGGTATCATAGAAAATGGGTTTTGAGCAAGGGACATTCTTCTATGGAGCACGAGTTACGACTTCTCGATCGGTTGCAGAAGGCTGATTCTCGGAATTTCCATGCATGGAATTACCGCAGATTTGTGGCAGAATTGATGAAAAGATCGGAGGACGATGAATTAAATTATACAACAGATATGATAAATAACAATTTCAGCAATTATTCAGCATGGCACAATCGCAGCATCCTTCTGTCTAATATGCTAAACAAAAAGGTTCAAGGCTTTACCCCTAAAGAAAAGGTGTTAAGTGAAGAGTTTGAGTTTGTACATCAAGCACTTTTCACAGATCCTGATGATCAAAGTGGTTGGTTTTACCATCTGTGGCTTCTTGATCAAACAATTAAACACGATTCCCCTCGACTTGTTTCTTCTTGGCCTGCTCACGCTCATAATGTAACCAGTTACCTGGATAATCATGCCTTGTCTCCATTTGATTGTTCTTCCTCCGAGTCAGGAACATTTCCTCTTGTTCTCTATTTTGATCAAGCTGTTGAAGGAGTGAACTCTTCCACAGTGACAGTTGAATCTGTAATTACCACAAATAAAGATCTAATTTGGAAACCTCTTTCACAAAGTAACTCCAAGATTGCCCAAGTTTGGGCTACCCATCTAATTTTTGCTGGTGGAGAGCTCCATTCTTCTGAGGCTTATCCAGTCAAAGTTAGTCTTGGACATGCTCAAGGAATCATTTCTTCAAGTGGTTATCCCTATATCCATAAAACTTGTTTTACCTTCAAAGTTTGCAGGCAGCCTATTGAAACAAAACCTGCTGGACTACAGGATGGAGGTGGAATTGTTTGGAATGATGACAGATTTTTTATATATAGTCCACATCTACAGGACTCGAGCCCAAGTATATGTTTTGACCAACTATCTATAGAGGTTGATCATGAGTTATCATCAACTTCTAAGTGGCGTGCCCAGACCATATCTAATGAAATAGCTCTTTTCCGTGAACTATTATTAGAAATTAACTGTAAAATTGGAAAACTTACTCTTACAAGATTATTGACGGCTCACGATGCAATATTGTCACCACATGCTAACAACGTGTCCCACTCTGAAGAAGTTCTTAAACTTTATGAAGACTTGATGAAGCTGGAACCATCACATCTTCATTACTACAAGGAAGAACACAGTTTAGTTTTACTGCGGCAGTTAACTTCCACTTGGGAGTCTATATTGAAACACTGCTATCAGTATGGAGAATCATGTTCATCATCAAATTTATGTAATTCTATCTGTCTACGTCTCAATAATTTATCAATATCGCGGATAGGGTCAATTGAGAAATTATTGTGGGTCCAAATGCTCGACCTCAGCCACAACGAACTTAAATCAATTGAAGGATTACAGGCTATGCAGCTCCTCTCTTGCTTAAATCTTAGTTACAATAAATTCAGCAGTTTCGCTGCATTAGATCCTCTGAGGCCATTGAAGTCATTAAAGGTATTGAATATCTCATACAATGAGATCGGCTCACATTCAATCGACACAGCAAGGTATCTGTGTTCTTCTCCTTTGTCTCATAGTGAAGTTATTGATTCCAACTTTAAAAAATTAGTTTGTGATGGTGTGAATGTGACAAAGTATTGGGAAGCTTATTTGGTATTTAAAGACTTGAGCTTAACACAGTTGGATTTAGTGGGCAATGTAATATCAGATGAAGAATTTGTGTCATTCTTGACAAAGGTTGCCCCCACACTTAAGCTGCTCGATGGTGTAGAACTACATTGA 2103 40.13 MHGRPRVPQNPEDEGVLAAKAQKLRSLQSQLLSNHHSKIYTKEALEVSAKLLEINPESYTAWNFRKLAVQHSLTRSESDDPDSVKAILNDELRVVENALKQNFKSYGAWYHRKWVLSKGHSSMEHELRLLDRLQKADSRNFHAWNYRRFVAELMKRSEDDELNYTTDMINNNFSNYSAWHNRSILLSNMLNKKVQGFTPKEKVLSEEFEFVHQALFTDPDDQSGWFYHLWLLDQTIKHDSPRLVSSWPAHAHNVTSYLDNHALSPFDCSSSESGTFPLVLYFDQAVEGVNSSTVTVESVITTNKDLIWKPLSQSNSKIAQVWATHLIFAGGELHSSEAYPVKVSLGHAQGIISSSGYPYIHKTCFTFKVCRQPIETKPAGLQDGGGIVWNDDRFFIYSPHLQDSSPSICFDQLSIEVDHELSSTSKWRAQTISNEIALFRELLLEINCKIGKLTLTRLLTAHDAILSPHANNVSHSEEVLKLYEDLMKLEPSHLHYYKEEHSLVLLRQLTSTWESILKHCYQYGESCSSSNLCNSICLRLNNLSISRIGSIEKLLWVQMLDLSHNELKSIEGLQAMQLLSCLNLSYNKFSSFAALDPLRPLKSLKVLNISYNEIGSHSIDTARYLCSSPLSHSEVIDSNFKKLVCDGVNVTKYWEAYLVFKDLSLTQLDLVGNVISDEEFVSFLTKVAPTLKLLDGVELH 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6604051 6607886 + Conep07aG0089200.1 Cone7ag0863 441459

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0863 700 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 122 156 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Cone7ag0863 700 ProSiteProfiles Leucine-rich repeat profile. 556 577 IPR001611 GO:0005515(InterPro)
Cone7ag0863 700 SUPERFAMILY Protein prenylyltransferase 1 499 - -
Cone7ag0863 700 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 203 237 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Cone7ag0863 700 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 87 121 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Cone7ag0863 700 Gene3D Ribonuclease Inhibitor 518 700 IPR032675 -
Cone7ag0863 700 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 157 191 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Cone7ag0863 700 PANTHER PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT 1 508 - GO:0004663(PANTHER)|GO:0005737(PANTHER)|GO:0005968(PANTHER)|GO:0018344(PANTHER)
Cone7ag0863 700 Pfam Protein prenyltransferase alpha subunit repeat 124 152 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Cone7ag0863 700 Pfam Protein prenyltransferase alpha subunit repeat 159 189 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Cone7ag0863 700 Pfam Protein prenyltransferase alpha subunit repeat 42 71 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Cone7ag0863 700 Pfam Protein prenyltransferase alpha subunit repeat 88 118 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Cone7ag0863 700 Pfam Protein prenyltransferase alpha subunit repeat 204 234 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Cone7ag0863 700 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 40 74 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Cone7ag0863 700 SUPERFAMILY L domain-like 528 698 - -
Cone7ag0863 700 Gene3D Protein prenylyltransferase 1 260 - -
Cone7ag0863 700 ProSiteProfiles Leucine-rich repeat profile. 578 599 IPR001611 GO:0005515(InterPro)
Cone7ag0863 700 FunFam Geranylgeranyl transferase type-2 subunit alpha 1 241 - -
Cone7ag0863 700 ProSiteProfiles Leucine-rich repeat profile. 664 685 IPR001611 GO:0005515(InterPro)
Cone7ag0863 700 FunFam Rab geranylgeranyl transferase like protein 513 700 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0863 K14050 - - vvi:100248920 900.968
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1291 Cone-Chr4:10675735 Cone7ag0863 Cone-Chr7:6604051 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g528 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0863 . . Lsi04g02283 . . . . . . . . . . . . . . . . . . . Cpe02g00478 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005438 1 5 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 2 37