Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0869 ATGTCCTCTAAAGGCCAGCTACAATTGCATGTTAAGGACCATCATGTGATAATGGAGAATGGCATTGTCCAAGTGACACTCTCTAAACCAGGGGGAATTGTTACCGGAATACAATTTAACGGAATCCAAAACTTGATTGAAACCAGTGGTGATAAAGTTCATAGAGGGTACTGGGACCTTGTCTGGAACAAGACAGGAAGTACAGGAACCACAGGAACTTTCGATATCATAGAAGGAACAAGTTTTGAAATAATAATGCAAAACGAAGAGCAGATAGAGATTTCTTTTAAGAGATTATGGGATTCCTCACTGGCAGTCAAGGCTGTTCCCTTAAATATAGATAAAAGGTTTATTATGCTTCGAAGTTCATCGGGTGTCTACTCCTATGCAATCTACGAACACTTGAAAGATTGGCCTCCTTTTAATCTTCCTCAAACCAGAATTGTGTTCAAGCTACGAAAAGACAAATTTCGCTACATGGCGGTAGCGGATAATAGACAGAGATATATGCCGCTTCCAGATGATCGATTACCGGACAGAGGGCAGGACTTAGTTGTTCCAGAAGCTGTCTTGCTGGTTAATCCTATAGAGCCGGAGTTCAAGGGAGAGGTTGATGACAAGTACCAGTACTCGTGCGAAAATCGGGATCTTCAGGTTCATGGGTGGATATGCTCTGACCCGAACGTAGGTTTCTGGCAAATCACTCCTAGCAGTGAGTTTCGGTCGGGTGGTCCCCTCAAACAGAACCTTAGTTCTCATGTGGGCCCTTATGCTCTTGCTATGTTCTTGAGTGCTCACTATTCAGGAGAGGATTTAGTTCTAAAACTCAAACCAGAGGAGGCATGGAAGAAAGTATTTGGGCCCATCTTTATATACCTCAATTCTGTTAATGTCCAAGACACAAATGATACTGATCAAGATCCTTTCCTTTGGCTGTGGGAGGATGCTAAAAAACAGATGATAACGGAAGAACAGAGCTGGCCCTACAGCTTCCCAGCTTCAGAGGATTTTCCAACGGCAGATCGGCGTGGCAACCTTACCGGCTTATTACAAGTTCAGGACATATATGTTAGTGTGAAGCCCATTCCGGCAACCGATGCTTATGTAGGTTTGGCACCGCCTGGAGATGTAGGATCATGGCAGAGAGAATGCAAGGGATACCAATTCTGGACCAAAGTAGAAGCAGATGGCTCTTTCTGCATAAAAAATATAAGGAGTGGTGACTACAATCTTTATGCGTGGGTACCCGGTTTCATCGGAGATTACAGATATGATGCTACCATTACTATATCCGAAGGCTGTAATATTGACATTGGTAGTATTGTGTTCGAGCCACCAAGAGATGGACCGAACTTGTGGGAAATAGGAATACCCGATCGCTCTGCTGCTGAATTTTATGTTCCCGATCCTAATCCTAATTATATTAATAAATTATATGTTAATCATCCTGACAGGTTTAGGCAATATGGATTATGGGAAAGATATGCTGAATTGTATCCTGATGGAGATTTGGTGTATAGAGTCGGTGTTAGTGACTACAAAAAAGATTGGTTTTTCGCCCAGGTTACTAGGAAGAAAGATGATGGAACATACCAAGGCACCACGTGGCAAATCAAGTTCGAGCTCGATCATGTCGACCCAAGCGCCAATTATAAGCTGCGCGTGGCACTGGCAACGGCCAACGTGGCCGAATTACAGATTCGGGTAAATGGCAAGCCGGAAGTAGATCCACCTCTGTTTTCAACCGGACAAATCGGGAACGACAACACTATTGTTAGACATGGGATTCACGGTCTATACAGACTCTACCACATCGACATCGCTCCTAAACTTCTACATACAGAAGGAGATAACACTATTTACTTATCGCAGCCCTTGTGCACTGGACCTTTACAGGGACTCATGTATGATTATATCCGCTTAGAAGCACCCCCATCACCTCCTACTTCTAGTACTACTTCACGCTCCTCCGACAAGTAA 1980 43.74 MSSKGQLQLHVKDHHVIMENGIVQVTLSKPGGIVTGIQFNGIQNLIETSGDKVHRGYWDLVWNKTGSTGTTGTFDIIEGTSFEIIMQNEEQIEISFKRLWDSSLAVKAVPLNIDKRFIMLRSSSGVYSYAIYEHLKDWPPFNLPQTRIVFKLRKDKFRYMAVADNRQRYMPLPDDRLPDRGQDLVVPEAVLLVNPIEPEFKGEVDDKYQYSCENRDLQVHGWICSDPNVGFWQITPSSEFRSGGPLKQNLSSHVGPYALAMFLSAHYSGEDLVLKLKPEEAWKKVFGPIFIYLNSVNVQDTNDTDQDPFLWLWEDAKKQMITEEQSWPYSFPASEDFPTADRRGNLTGLLQVQDIYVSVKPIPATDAYVGLAPPGDVGSWQRECKGYQFWTKVEADGSFCIKNIRSGDYNLYAWVPGFIGDYRYDATITISEGCNIDIGSIVFEPPRDGPNLWEIGIPDRSAAEFYVPDPNPNYINKLYVNHPDRFRQYGLWERYAELYPDGDLVYRVGVSDYKKDWFFAQVTRKKDDGTYQGTTWQIKFELDHVDPSANYKLRVALATANVAELQIRVNGKPEVDPPLFSTGQIGNDNTIVRHGIHGLYRLYHIDIAPKLLHTEGDNTIYLSQPLCTGPLQGLMYDYIRLEAPPSPPTSSTTSRSSDK 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6678678 6682437 - Conep07aG0089800.1 Cone7ag0869 441465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0869 659 Gene3D - 341 438 - -
Cone7ag0869 659 Gene3D - 449 642 - -
Cone7ag0869 659 Pfam Polysaccharide lyase family 4, domain III 452 641 IPR029411 -
Cone7ag0869 659 CDD RGL4_M 342 441 IPR029413 -
Cone7ag0869 659 Pfam Rhamnogalacturonate lyase family 4 204 IPR010325 -
Cone7ag0869 659 SUPERFAMILY Galactose mutarotase-like 18 301 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cone7ag0869 659 CDD RGL4_N 15 301 - -
Cone7ag0869 659 SUPERFAMILY Starch-binding domain-like 385 438 IPR013784 GO:0030246(InterPro)
Cone7ag0869 659 SUPERFAMILY Galactose-binding domain-like 448 642 IPR008979 -
Cone7ag0869 659 FunFam Rhamnogalacturonate lyase B 339 438 - -
Cone7ag0869 659 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 4 645 IPR051850 -
Cone7ag0869 659 CDD RGL4_C 453 642 - -
Cone7ag0869 659 Gene3D - 8 294 IPR014718 GO:0030246(InterPro)
Cone7ag0869 659 Pfam Polysaccharide lyase family 4, domain II 366 437 IPR029413 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1186 Cone-Chr17:8698186 Cone7ag0869 Cone-Chr7:6678678 0 dispersed
Cone4ag1284 Cone-Chr4:10555096 Cone7ag0869 Cone-Chr7:6678678 4.98E-263 dispersed
Cone4ag1283 Cone-Chr4:10549015 Cone7ag0869 Cone-Chr7:6678678 0 wgd
Cone6ag1513 Cone-Chr6:11957773 Cone7ag0869 Cone-Chr7:6678678 1.04E-272 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0869 K18195 - rcu:8280340 998.423