Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0875 ATGGAGTTCAATGATGATCATGGTTTAGAGGAACTATTAGCTCTAAGAAGAGACACATGGGAAGCCATTGTTCCGACAGAAATGAACGAGCTTCTAGTATTCAATGGCTTTAGTACTACTTTTGATAATGGCTTTGATCATCATGATCAAAACCATGTAAAATTTCTTCCAGATTCATCCCCACCGTTCGATCAACAAAGCCTCAACTTCGACCAAGTCTACTACCCTTATAACTTTTCCAATAGTAACAACACTCATCCATTTGATGCACCCCCTTTTGGTTATGTTCATCAAGATAATTACCCTATTTCAAACATGGAAGAAGAAGAGCTTGAGATTCTTGCAGATGAGATTCACAATTTGGAAGTGCAGGCGAGTAGTACTAGTACTAGCAATTGCAAAATGGAGCCGGCTCAATCGCCCGATCATCAAGAAGGCCGGGCAGGTGGTGGCGGCGGCGTTTTCAACACGGCTGCCACGGCCATCTGTTACGAAAGAAAGAATCGGAGTAATAAGAAGTTGCAAGGACAACCATCCAAGAATCTAATGGCTGAAAGAAGGAGGAGAAAGCGGCTGAATGACCGCCTTTCTATGCTTAGATCCATTGTTCCGAAGATTAGCAAGATGGATAGAACTGCTATACTGGGAGATGCCATAGACTACATGAAAGAACTGTTGGAGAAGATCACTAACTTGCAAAGACAAATTCATGAAGTGGGTTCTACCGATCAAATCGACATGAACATTTTCAAAGATATCAAACCCAGTTCATTCTTAGTCAGAAATTCACCAAAGTTCGAGGTGGAAAGGAGAAGTAGAGATACTAGGATTGAGATATGCTGTGCAGGAAAAACAGGGTTGTTACTATCTACAATTAACACACTAGAAGCATTGGGCCTTGAGATTCAACACTGTGTCATTAGCTGCTTCAACGATTTTGCAATGGAAGCTTCCTGTTCAGAGGAACAGGAGCAGAGAGAATTGGTAAGCCACGATGAGATAAAGCAGACATTGTTTAGGAATGCAGGGTATGGAGGAAGATGTCTGTAG 1050 41.9 MEFNDDHGLEELLALRRDTWEAIVPTEMNELLVFNGFSTTFDNGFDHHDQNHVKFLPDSSPPFDQQSLNFDQVYYPYNFSNSNNTHPFDAPPFGYVHQDNYPISNMEEEELEILADEIHNLEVQASSTSTSNCKMEPAQSPDHQEGRAGGGGGVFNTAATAICYERKNRSNKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILGDAIDYMKELLEKITNLQRQIHEVGSTDQIDMNIFKDIKPSSFLVRNSPKFEVERRSRDTRIEICCAGKTGLLLSTINTLEALGLEIQHCVISCFNDFAMEASCSEEQEQRELVSHDEIKQTLFRNAGYGGRCL 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6768236 6769749 + Conep07aG0090400.1 Cone7ag0875 441471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0875 349 Pfam Helix-loop-helix DNA-binding domain 183 225 IPR011598 GO:0046983(InterPro)
Cone7ag0875 349 Coils Coil 104 124 - -
Cone7ag0875 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 239 IPR036638 GO:0046983(InterPro)
Cone7ag0875 349 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 127 344 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone7ag0875 349 Gene3D - 165 241 IPR036638 GO:0046983(InterPro)
Cone7ag0875 349 CDD ACT_UUR-ACR-like 275 315 - -
Cone7ag0875 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 225 IPR011598 GO:0046983(InterPro)
Cone7ag0875 349 SMART finulus 182 231 IPR011598 GO:0046983(InterPro)
Cone7ag0875 349 MobiDBLite consensus disorder prediction 125 151 - -
Cone7ag0875 349 Coils Coil 215 242 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0666 Cone-Chr2:31780609 Cone7ag0875 Cone-Chr7:6768236 3.25E-12 dispersed
Cone7ag0875 Cone-Chr7:6768236 Cone9ag1430 Cone-Chr9:10624747 4.70E-70 dispersed
Cone17ag1159 Cone-Chr17:8553316 Cone7ag0875 Cone-Chr7:6768236 3.03E-69 wgd
Cone20ag0570 Cone-Chr20:3250453 Cone7ag0875 Cone-Chr7:6768236 3.92E-68 wgd
Cone4ag1276 Cone-Chr4:10485093 Cone7ag0875 Cone-Chr7:6768236 1.19E-234 wgd
Cone7ag0875 Cone-Chr7:6768236 Cone9ag1420 Cone-Chr9:10535519 1.28E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46506 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0875 - - - 0.0