Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0877 ATGCCGCCACCGCCACCGCCAACGCCACATTTTATTCACATCCTCTGTTTTTTCTGCTTACTCTGTAACGTCAAAGCCGACGACCTTCAAATCCTACTCAAACTGAAAACCGCGCTCCAAAATTCAAACACCGACGACGTGTTCAAATCCTGGACATCTTCTACCTCCGTCTGCCACTTCACCGGAGTCGCCTGCAGTTCAGACGGTTCAGTCAGAGAAATCGAGCTCTCCAATCAGAAGCTATCCGGATCAATTCCATTTGATTCCATCTGCCAGCTTCCAGAATTGGAAAAGCTCTCTCTCGGATTCAACTTCCTGTACGGAACAATCGCAGTGGATCTTAATAATTGTGTCAAGTTGAAGTATCTGGATTTAGGGAACAATTTACTCTCCGGCACGATCCCGAACATTTCTTCTTTAAGCAAATTGGAGTATTTGTATTTAAACACGAGCGGATTCTCCGGCACGTTTCCATGGAAATCGTTGACGAACATGACGAGCTTGATTCGATTAAGCATTGGGGATAATCCTTTTAATAGAAGCAATTTCCCTAACGAAGTGCTCAATCTGAAGAAGCTGAACTGGCTTTATTTATCAAATTGCAGTCTCGAAGGTGAAATTCCAGCGGCGATCGGAAACCTAACGGAGCTGATTAACCTAGAGCTCTCTGACAATTACTTGACGGGATCTCTTCCGGCTGAGCTCGGTAACCTTCGAAATCTATGGCAGCTTGAGCTCTACAACAATTTATTGAACGAAACGCTTCCAGTCGGTCTGAGAAATCTCACGCGTCTTGAGAATTTCGACGCATCGACGAACTTTCTAGAAGGCGACTTATCGGAGTTGAGATTCTTAACCAATCTGGTTTCTCTACAACTCTTTGAAAACTTGTTGACCGGTCATATTCCCGCCGAATTTGGCGAGTTTAAGCGCCTAACAAATCTCTCTCTGTACACGAATCAACTGACCGGCCCTCTTCCTCAATCGCTAGGTTCTTGGGCGAATTTTGATTTTATCGACGTGTCGGAAAATTTCCTGACCGGTGAAATCCCGCCCGACATGTGTAAAATGGGGACGATGAAGTCCCTTCTTATACTTCAGAACAACTTCACAGGCCAAATTCCGGCAAGTTATGGGAACTGCACCACCTTACGACGGTTCAGAGTGAGGAACAACTCGCTCTCTGGCGTAGTTCCGGCCAAAATATGGGGCTTACCGAACCTGAACATAATCGACCTCGAGTTGAACCAATTAGAAGGTCCAATCACATCCGACATTCAATACGCAGTTTCTCTAGCACAACTATTCGCCGCAAATAATCACTTGAACGGTAATCTACCGGCGGAGATTTCAAAAACAACATCCTTAGTTGCAATAGACTTGAGTTTCAATCAATTCTATGGAGAAATTCCAACCTTGATAGGTTCACTAAACCGCTTAGGGAATCTTCATTTACAGAGCAACAAATTTTCCGGTTCAATACCGGAATCAATCGGCTCATGTACTTCTCTAAGTGATCTAAATCTCGGTCAAAATTCACTATCTGGTGAAATCCCACCATCTCTAGGCTCCTTACCGTCTCTAAACTCCTTAAACTTATCCCAAAACGAGCTTTCCGGTCAAATTCCAAAAAGTTTATCATCACTTAAACTAAGCTTGCTTGATCTTTCCAATAACCGATTAACTGGTCTGATACCACAATCTTTATCGATCGCAGCATACAATGGTAGCTTTGCAGGAAATCCTGGGCTATGTAGCATGGAAGTAAGCTCTTTCCATAGGTGCTCGGTGGGTCCCGGCCTTCCGCGTTCCATTAGAACCCTTGTCATTTGCCTAGTACTGGGTTCTGTTCTATTAATGATGTCTTTGGTCTTGTTTCTCTACTTGAGAAAGATCGAAAAGGACCGAGAGCGGGACCCGGATCGGGACCGGTCATTGAAGGAAGACTCATGGGACTTGAAGTCCTTCCATGTACTGACATTTACAGAAGATGAGATTCTCGATTCCATCAAAGAAGAGAATCTAATCGGACGAGGAGGATCTGGGAATGTTTACAGAGTGACCGTTGATAATAGCAAAGAGCTAGCCGTGAAGCATATTTGGAACACCGATTTGAAACCCCAAAAGGGATCTAAATCCAAAACACCGATTCTCCCCAAGCGTGGATCGAAGTCCAAGGAATTTGATGCTGAAGTGGAGACTCTGAGCTCAATCAGGCATGTCAATGTGGTGAAGTTGTATTGCAGCATTACAAGCGAAGATTCCAGCTTGTTGGTGTATGAATACATGCCGAATGGAAGCTTGTGGGACCGGCTTCATGGTAGTATGAAAATGGTGCTTGATTGGGAAACTAGATATGAAATTGCTGTAGGAGCTGCTAAAGGATTGGAGTATCTTCATCATGGGTGTGAAAGACCTGTGATTCACAGAGATGTCAAGTCTAGTAATATCTTGTTGGATGAGTTCTTGAAGCCTAGGATTGCTGATTTTGGTCTTGCCAAGATAGTTCAGACAAGTAATGTGTTCAAGGATTCCTCCCATATCATTGCCGGTACTCTTGGCTATATAGCTCCCGAATATGGGTACACAAGCAAAGTGAATGAGAAGAGTGACGTGTACAGTTTCGGAGTGGTGTTGATGGAATTGGTGAGTGGGAAGAGGCCCATAGAGCCAGAATTTGGAGACAACAAGGACATAGTGAATTGGGTTTCAAGCAATTTGAAGAGCAAAGACAGTGTGTTTAGTATAGTTGATTCCAGAATCCCAGATGGGCTCAAGGAAGGAGCAATCAAGGTGTTAAGAATCGCCATTCTCTGCACTGCACGGCTTCCTACAAAGAGACCTACCATGAGAAGTGTCGTCAAAATGATCAAAGATGCCGACCCTTGTCGAATCGTGAGCATCGTGATCAGCAAAGATCAAAGGCTTTCTAATTTCAAGAAGCTTGATTCATGA 2955 44.2 MPPPPPPTPHFIHILCFFCLLCNVKADDLQILLKLKTALQNSNTDDVFKSWTSSTSVCHFTGVACSSDGSVREIELSNQKLSGSIPFDSICQLPELEKLSLGFNFLYGTIAVDLNNCVKLKYLDLGNNLLSGTIPNISSLSKLEYLYLNTSGFSGTFPWKSLTNMTSLIRLSIGDNPFNRSNFPNEVLNLKKLNWLYLSNCSLEGEIPAAIGNLTELINLELSDNYLTGSLPAELGNLRNLWQLELYNNLLNETLPVGLRNLTRLENFDASTNFLEGDLSELRFLTNLVSLQLFENLLTGHIPAEFGEFKRLTNLSLYTNQLTGPLPQSLGSWANFDFIDVSENFLTGEIPPDMCKMGTMKSLLILQNNFTGQIPASYGNCTTLRRFRVRNNSLSGVVPAKIWGLPNLNIIDLELNQLEGPITSDIQYAVSLAQLFAANNHLNGNLPAEISKTTSLVAIDLSFNQFYGEIPTLIGSLNRLGNLHLQSNKFSGSIPESIGSCTSLSDLNLGQNSLSGEIPPSLGSLPSLNSLNLSQNELSGQIPKSLSSLKLSLLDLSNNRLTGLIPQSLSIAAYNGSFAGNPGLCSMEVSSFHRCSVGPGLPRSIRTLVICLVLGSVLLMMSLVLFLYLRKIEKDRERDPDRDRSLKEDSWDLKSFHVLTFTEDEILDSIKEENLIGRGGSGNVYRVTVDNSKELAVKHIWNTDLKPQKGSKSKTPILPKRGSKSKEFDAEVETLSSIRHVNVVKLYCSITSEDSSLLVYEYMPNGSLWDRLHGSMKMVLDWETRYEIAVGAAKGLEYLHHGCERPVIHRDVKSSNILLDEFLKPRIADFGLAKIVQTSNVFKDSSHIIAGTLGYIAPEYGYTSKVNEKSDVYSFGVVLMELVSGKRPIEPEFGDNKDIVNWVSSNLKSKDSVFSIVDSRIPDGLKEGAIKVLRIAILCTARLPTKRPTMRSVVKMIKDADPCRIVSIVISKDQRLSNFKKLDS 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6792849 6796161 + Conep07aG0090600.1 Cone7ag0877 441473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0877 984 Gene3D Ribonuclease Inhibitor 472 596 IPR032675 -
Cone7ag0877 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag0877 984 FunFam Probable inactive receptor kinase RLK902 25 185 - -
Cone7ag0877 984 FunFam Receptor-like protein kinase HAIKU2 653 762 - -
Cone7ag0877 984 Gene3D Ribonuclease Inhibitor 27 138 IPR032675 -
Cone7ag0877 984 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 281 958 IPR051716 -
Cone7ag0877 984 FunFam Leucine-rich receptor-like protein kinase family protein 186 281 - -
Cone7ag0877 984 Gene3D Transferase(Phosphotransferase) domain 1 763 969 - -
Cone7ag0877 984 Pfam Leucine Rich Repeat 217 238 IPR001611 GO:0005515(InterPro)
Cone7ag0877 984 Pfam Leucine Rich Repeat 551 569 IPR001611 GO:0005515(InterPro)
Cone7ag0877 984 Pfam Leucine Rich Repeat 482 501 IPR001611 GO:0005515(InterPro)
Cone7ag0877 984 Pfam Leucine Rich Repeat 527 549 IPR001611 GO:0005515(InterPro)
Cone7ag0877 984 Pfam Leucine Rich Repeat 503 525 IPR001611 GO:0005515(InterPro)
Cone7ag0877 984 Pfam Leucine Rich Repeat 119 136 IPR001611 GO:0005515(InterPro)
Cone7ag0877 984 Pfam Leucine Rich Repeat 192 214 IPR001611 GO:0005515(InterPro)
Cone7ag0877 984 Pfam Protein kinase domain 672 955 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0877 984 Gene3D Ribonuclease Inhibitor 362 471 IPR032675 -
Cone7ag0877 984 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Cone7ag0877 984 Gene3D Ribonuclease Inhibitor 139 361 IPR032675 -
Cone7ag0877 984 SMART serkin_6 670 957 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0877 984 SUPERFAMILY L domain-like 56 350 - -
Cone7ag0877 984 SUPERFAMILY Protein kinase-like (PK-like) 662 957 IPR011009 -
Cone7ag0877 984 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 763 974 - -
Cone7ag0877 984 Gene3D Phosphorylase Kinase; domain 1 654 762 - -
Cone7ag0877 984 SUPERFAMILY L domain-like 280 596 - -
Cone7ag0877 984 ProSitePatterns Protein kinases ATP-binding region signature. 676 698 IPR017441 GO:0005524(InterPro)
Cone7ag0877 984 FunFam Leucine-rich repeat receptor-like protein kinase TDR 282 597 - -
Cone7ag0877 984 ProSiteProfiles Protein kinase domain profile. 670 964 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0877 984 SMART LRR_typ_2 238 262 IPR003591 -
Cone7ag0877 984 SMART LRR_typ_2 190 214 IPR003591 -
Cone7ag0877 984 SMART LRR_typ_2 525 549 IPR003591 -
Cone7ag0877 984 SMART LRR_typ_2 477 501 IPR003591 -
Cone7ag0877 984 SMART LRR_typ_2 93 117 IPR003591 -
Cone7ag0877 984 SMART LRR_typ_2 285 309 IPR003591 -
Cone7ag0877 984 ProSiteProfiles Leucine-rich repeat profile. 119 141 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1152 Cone-Chr17:8485685 Cone7ag0877 Cone-Chr7:6792849 2.78E-240 dispersed
Cone4ag1197 Cone-Chr4:10087329 Cone7ag0877 Cone-Chr7:6792849 8.36E-85 dispersed
Cone4ag1267 Cone-Chr4:10427416 Cone7ag0877 Cone-Chr7:6792849 0 dispersed
Cone7ag0877 Cone-Chr7:6792849 Cone9ag0992 Cone-Chr9:5100982 5.30E-93 dispersed
Cone7ag0877 Cone-Chr7:6792849 Cone7ag0878 Cone-Chr7:6807374 3.42E-93 tandem
Cone17ag1151 Cone-Chr17:8480964 Cone7ag0877 Cone-Chr7:6792849 8.07E-98 wgd
Cone4ag1266 Cone-Chr4:10422660 Cone7ag0877 Cone-Chr7:6792849 5.11E-92 wgd
Cone6ag1492 Cone-Chr6:11817691 Cone7ag0877 Cone-Chr7:6792849 4.00E-77 wgd
Cone7ag0877 Cone-Chr7:6792849 Cone9ag1416 Cone-Chr9:10501865 3.85E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83032 PF16953 PRORP 8.90E-75 CL0280 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0877 - - - 0.0