Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0878 ATGGATTTCCCATATTCAAGTTTCTTCATCTTCTTCCATCTTCTTTCCCTCATCTCCCTTTCCTTTTCCTCTACTTATAGTGCTCACAACAACAAATCTCAATTCTTCACCCTCATGCACAAAACACTCTCCGGACCAGTTTTGTCCGATTGGCATCTTACCGATCGAAAGTCTTTCTGCAATTTCACCGGCATCTCCTGCGACGTCAACCAACACATCATTGGACTCGACCTCTCCGGCAGGTCACTGTCTGGAACCTTTCCGCCCAACGTATGCACGTACCTGCCGGAGCTCCGAGTCCTCCGTCTCGGTCGGAGCGGTGTACAAGGCACCTTCCCTCAAGGCATCACCAATTGCTCTGATTTAGAAGAACTCGACTTGAGCCTCCTATACCTCACCGGACCGATCCCCAACTTATCGCCAATGACGTCATCACTCCGTATCCTCGACCTCTCCTACAACCACTTCACCGGTGAGTTTCCGATCTCTGTCTTCAGTCTGATAAACCTCGAGATTCTCAATTTTAATGAAGATAACAACATGAACTTGTGGGAGTTGCCGGAGAATATCTCCGGCATGACGAAGCTCAAGTCAATGATTTTGACTACGTGCATGGTACGGGGCCCGATCCCGAAGTCAATTGGAAACATGACGTCACTGGTTGACCTTGAGCTAAGCGGTAACTACTTAACCGGTCAAATCCCGAAAGAAATCGGGTTGTGCAAAAACCTCAGACAGCTCGAACTCTACTATAACCTTCTTGTCGGAACTATACCGGAAGAGCTCGGGAACCTGACCGAGCTTGTAGAGCTCGACATGTCGGTCAACCAATTGACCGGGAACATTCCGGAATCTATCTGCCGTCTTCCGAAGCTCGCAGTATTCCAGCTTTATAATAACAGCTTGACAGGTAAGATTCCGGATGCGATCGCCAAGTCAACTACTCTCACCATGCTGTCACTTTATGATAACTCGTTGACTGGAGAAGTTCCGAGAAGTTTGGGGCACTTATCGCCTATGAACGTTCTCGACTTGTCGGAAAATCACCTTTCGGGCCCGCTTCCAGCAGATGTTTGCCAGGAAGGCAAACTGCAGTACTTCCTCGTCCTGGATAACGAGTTTACAGGGCAGATTCCGGAATCCTATTCAAACTGCAGATCGCTTTTACGGTTCCGGGTCAGTTCGAATCGGTTAACTGGGCCGGTGCCAGAAGGCATTCTCGGGCTGCCTAGAGTCTCGATCATTGACCTCGGAAATAATGATTTGACCGGTCAACTACCGAGTTCTTTCTCAATGGCCCGGAACTTGTCAGAATTGTTCACGCAAAGCAACCGAATTTCAGGTGATCTTCCTTCCGGAATCTCTAAAGCGATGAGCTTGGTGAAAATCGATTTAAGTAAGAATCTTTTAACCGGTCCGATACCTTGGGAAATAGGCAACCTCAAGAAGCTGAACTTACTTCTTCTACAAGGCAACAAGCTCAACTCTTCAATCCCAAGTTCACTCTCGTCCCTAAAATCCCTCAATGTTCTAGACCTTTCCGACAATCTGCTAACTGGAAACATCCCGGAAAGTCTCTCTGAATTGCTTCCAAACTCGATCAATTTCTCGAACAATCAACTCTCAGGTCCGATCCCTCTGTCTCTAATCAAAGGAGGATTGATCGAGAGCTTTTCTGGGAATCCTAGGCTCTGCGTTTCCGTAACTGTAACCAATTCTTCAGACCATAACTTCCCGCTCTGCATGAAAACTTCTGCCCGGAAAAGACAAAACTCCTTCTGGGCAATCGCAATATCAGCGGCAATCATCTTCATAGCGGGCGTGATCTTTCTTAAACGCAAGTTTGATAAACAAAAAAAGGAGCAGGACCCGGTTGACCAAATCACATCTTCTTCAGTATTCTCTTACGATGTGAAGAGCTTTCATAGAATCAGCTTTGACCAGAGAGAGATAATCAAAGCCATGGGAGAGAAGAACAAGGTAGGGAAAGGAGGGTCGGGAACTGTGTACAGAATCGAGCTGAAAAGCGGAGAGATTGTAGCCGTCAAAAGTCTTCACAACCGGAAAACAAAAGATCTAACCCCTGAAGATCAAATAGGTCTAGACAAAGAGTTGAAAACAGAGGTGGAAACACTTGGAAGCATAAGGCACAAGAACATAGTTAAGTTGTACTGTTACTTCTCCAATCTGGATTTCAGTCTTTTGGTCTATGAATTCATGCCAAATGGAAATCTGTGGGATGCGCTCCGTTCTGGACGGGTCCATTTGGATTGGCCGACAAGGCATCAGATCGCGCTAGGTGTCGCTCAAGGACTGGCTTATCTCCATCACGACTTGTTTCCTCCAATCATTCATAGAGACATCAAAAGTACCAACATACTGCTTGATGTGAATTACCAGCCAAAAGTTGCCGATTTCGGAATTGCTAAGGTTTTACAAGCCCGGGCCGGAAAGGATTCCACCACTACCATTATTGCTGGTACTTACGGTTATTTAGCCCCAGAATATGCGTATTGTTCTAAGGCGACGACAAAGTGCGATGTGTACAGTTATGGAGTGGTGCTGATGGAACTGATAACGGGGAAGAAGCCGGTCGAGGCCGAGTTTGGAGAGAACAAGAACATAACCTACTGGGTTTCGAACAAAGTGGATACTAAGGAAGGGGCTATGGAGGTTTTGGAGAAACGACTGTCGGGATCTTATCGGGATGAGTTAATTCAAGCGCTTCGAATAGCGATATGCTGCACGTATAAGAATCCGGCGCTTCGTCCCACCATGAAAGAAGTGGTCCAGTTACTCATTGAAGCTGACCCTTGTAGATTGCACCATTCTCATTCCAATAACATGGCGAGCAAAGACAACCTGACTAAAGTAAAGAACCACATTTGA 2889 46.56 MDFPYSSFFIFFHLLSLISLSFSSTYSAHNNKSQFFTLMHKTLSGPVLSDWHLTDRKSFCNFTGISCDVNQHIIGLDLSGRSLSGTFPPNVCTYLPELRVLRLGRSGVQGTFPQGITNCSDLEELDLSLLYLTGPIPNLSPMTSSLRILDLSYNHFTGEFPISVFSLINLEILNFNEDNNMNLWELPENISGMTKLKSMILTTCMVRGPIPKSIGNMTSLVDLELSGNYLTGQIPKEIGLCKNLRQLELYYNLLVGTIPEELGNLTELVELDMSVNQLTGNIPESICRLPKLAVFQLYNNSLTGKIPDAIAKSTTLTMLSLYDNSLTGEVPRSLGHLSPMNVLDLSENHLSGPLPADVCQEGKLQYFLVLDNEFTGQIPESYSNCRSLLRFRVSSNRLTGPVPEGILGLPRVSIIDLGNNDLTGQLPSSFSMARNLSELFTQSNRISGDLPSGISKAMSLVKIDLSKNLLTGPIPWEIGNLKKLNLLLLQGNKLNSSIPSSLSSLKSLNVLDLSDNLLTGNIPESLSELLPNSINFSNNQLSGPIPLSLIKGGLIESFSGNPRLCVSVTVTNSSDHNFPLCMKTSARKRQNSFWAIAISAAIIFIAGVIFLKRKFDKQKKEQDPVDQITSSSVFSYDVKSFHRISFDQREIIKAMGEKNKVGKGGSGTVYRIELKSGEIVAVKSLHNRKTKDLTPEDQIGLDKELKTEVETLGSIRHKNIVKLYCYFSNLDFSLLVYEFMPNGNLWDALRSGRVHLDWPTRHQIALGVAQGLAYLHHDLFPPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARAGKDSTTTIIAGTYGYLAPEYAYCSKATTKCDVYSYGVVLMELITGKKPVEAEFGENKNITYWVSNKVDTKEGAMEVLEKRLSGSYRDELIQALRIAICCTYKNPALRPTMKEVVQLLIEADPCRLHHSHSNNMASKDNLTKVKNHI 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6807374 6810648 + Conep07aG0090700.1 Cone7ag0878 441474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0878 962 SUPERFAMILY Protein kinase-like (PK-like) 642 933 IPR011009 -
Cone7ag0878 962 Gene3D Transferase(Phosphotransferase) domain 1 740 957 - -
Cone7ag0878 962 FunFam Receptor protein-tyrosine kinase CEPR1 289 575 - -
Cone7ag0878 962 SUPERFAMILY L domain-like 180 410 - -
Cone7ag0878 962 SUPERFAMILY L domain-like 57 236 - -
Cone7ag0878 962 ProSiteProfiles Protein kinase domain profile. 655 940 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0878 962 SUPERFAMILY L domain-like 363 551 - -
Cone7ag0878 962 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 740 951 - -
Cone7ag0878 962 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag0878 962 Pfam Protein kinase domain 658 931 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0878 962 FunFam receptor protein-tyrosine kinase CEPR1 638 739 - -
Cone7ag0878 962 FunFam Leucine-rich repeat receptor-like protein kinase 183 285 - -
Cone7ag0878 962 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 16 934 IPR050647 -
Cone7ag0878 962 Gene3D Ribonuclease Inhibitor 181 285 IPR032675 -
Cone7ag0878 962 Gene3D Phosphorylase Kinase; domain 1 638 739 - -
Cone7ag0878 962 Gene3D Ribonuclease Inhibitor 32 180 IPR032675 -
Cone7ag0878 962 ProSitePatterns Protein kinases ATP-binding region signature. 661 683 IPR017441 GO:0005524(InterPro)
Cone7ag0878 962 SMART serkin_6 655 940 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0878 962 Pfam Leucine Rich Repeat 507 529 IPR001611 GO:0005515(InterPro)
Cone7ag0878 962 Pfam Leucine Rich Repeat 219 239 IPR001611 GO:0005515(InterPro)
Cone7ag0878 962 Pfam Leucine Rich Repeat 145 166 IPR001611 GO:0005515(InterPro)
Cone7ag0878 962 Pfam Leucine Rich Repeat 316 337 IPR001611 GO:0005515(InterPro)
Cone7ag0878 962 Pfam Leucine Rich Repeat 459 481 IPR001611 GO:0005515(InterPro)
Cone7ag0878 962 Pfam Leucine Rich Repeat 243 265 IPR001611 GO:0005515(InterPro)
Cone7ag0878 962 Pfam Leucine Rich Repeat 268 289 IPR001611 GO:0005515(InterPro)
Cone7ag0878 962 Gene3D Ribonuclease Inhibitor 294 575 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1151 Cone-Chr17:8480964 Cone7ag0878 Cone-Chr7:6807374 4.31E-244 dispersed
Cone20ag0578 Cone-Chr20:3319973 Cone7ag0878 Cone-Chr7:6807374 3.67E-118 dispersed
Cone3ag0073 Cone-Chr3:429185 Cone7ag0878 Cone-Chr7:6807374 7.44E-57 dispersed
Cone4ag1266 Cone-Chr4:10422660 Cone7ag0878 Cone-Chr7:6807374 0 dispersed
Cone7ag0878 Cone-Chr7:6807374 Cone7ag0930 Cone-Chr7:7273106 1.01E-84 dispersed
Cone7ag0877 Cone-Chr7:6792849 Cone7ag0878 Cone-Chr7:6807374 3.42E-93 tandem
Cone20ag0577 Cone-Chr20:3317756 Cone7ag0878 Cone-Chr7:6807374 3.19E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83033 PF16953 PRORP 1.40E-58 CL0280 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0878 - - - 0.0