Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0879 ATGAATGTGATTGGACTTCATTTGATCATATTATCGTCTTCTCAGTATATAGCAGACATGTCTGCTCCATCAACTCCTTCTAAGAGACCATTGGATGAGAACTGTACTGAATCAGATGAAAATGGAAAGAGTAAGCGGCAAAAGCCAACAGGGACTCGTTCTCAAAACCTTCCTATTAATAAACCCCGAGGGGGTATGGTTTTTCGTGTACTCTGTCATGCTTCGAAAGTTGGGTGTGTTATTGGAAAAGGTGGGGCTATAGTATTGCAGATATGTCAAGGAGCTGGTGCGAAGGTCAGAGTAGAGGAAAATGTATCTGGATGCGATGAAAGAATTGTTGTTATTTCCGAGTCTGATCAAGAGAACAAGGTTGAAGCTGAGCAGGGCAAGGATGAGGGTACCAAAGAGGAAAATGTGGAAGAAAATAATGAAGAGGAAAAGGAGGCTGATGCGAATGAAAAGAGAAAGAATGAGGAAGACAAGGATCCTGTTCCCATGGACAATGCTGGATTTGGAGAAGGAACTCCATCTGTGCAAAACGCGTTGTTACTAGTTTTTAAGAGAATGGTTGCTGGAGAACCAGGGCCAGAGGGAGGGGATGAAGGAAATGATGAGTCATCTATGTTTGTGTTCAGATTACTTGTGCTTTCCAATCAAATTGGGTGTATTTTGGGAAAAGGTGGCAGTGTGATCAAGCAAATGTCATCCGAGAGTGGGGCCCAGATCCGGATTCTCCCTAGGGACAAACTCCCTTCTTGTGCATCAGCCACTGATGAACTAGTTCAGATCAGTGGGGGAGTTGAAGCAGTTAGGAAAGCTCTTCAATCCGTTTCTCAGCAACTGTTGGATAATCCTCCCCGTGATAATGATCATTTTTCTGCCAACACCACTGTGCAGTCATCTCATTCATTTTGGCTGCCTCCTTCCAAGACAGAAGGACGGCTACTGAATAATCACTCTTTTTCTTCTCAAGGAGTACCCTATTCTGGACCTCCTCTGGCCCATAAGTATTATGAAAGTGGTGGTCCAGGTCAAATGAAACCTCCCGTTGAAATACTAAGCTTCCGCTTGCTGTGTCCTGATGAAAGGGCAGGAGGTGTAATTGGAAAGGGAGGAACCATAATAAAGTCACTTAAGCAAGAAACAGGCTGTGACATCAAAGTTATGGAGGCTGTCCCCGAATCAGAAGACCGCATTATTATCATCTCTGGCCCTGCGCACCCAGAAGATAGAATATCAGTTTTGCAAGATGCCGTTCTTCGTGTACAGAGTAGGATATTCCGAGCTGTACCTGATAGTAAGGAACAGAGTGTACTGGCTAGGCTTCTAGTTTCATCCAATCAAATTGGTTGTCTCTTGGGAAAGGGTGGTTCCATCATAGCTGAAATGAGAAAGTCATCTGGTGCACATATTCGTATACTTGGAAAAGATCAGGTTCCAAAGTGTGCTAAAGCAGATGAAGAAGTAGTTCAGATAAATGGAGATTTTGAAGCAGTTCAAGAAGCTATATTGCGGATAACTGCTAGATTGCAGCATCATTTTTTCCACGATCTATTTCCTTCCATTAATTATCCAACAAATCCAGCATTTTCGGATCAAGTACCTGTATTTTCATCCTATGGGGTAAGGAGAGAATTCTCACCTCCAGGAAGATATTCAAATTTAGGTCCCTCTTTTCACATTGATGGTGGTTTGCATCCTCGTGATGATCGAACAGCTTTCATGCACAAGATTCATAGACCAGGTGCTCTGCCTAATATATCTGACAGAAAACCATGGGGTTCCCGGGGATACGTTGAAGGTGGCGGACCACTAGGCTTGTCTGACTTTGCAGGAGCCCCACATGGAAGAAACGCTGGGTTTGGAGGAGGAAACCAACCACCTATTATTACAAGCACCACCATCGAGGTTTTTGTTCCTATTAACATTGTTCCTGTAATCCATGGAGAGGATGGTGAATGTTTGAAGCAAATTCGTCAGATATCTGATGCAAGAATTACAATTACTGAGCCAAAGCCGGAAGCAGCTGAAACTGTAATCGTAATTTCTGGAACACCTGAACAAACGCATGCTGCACAGAGTCTTATCCAAGCATTTGTAATGAGTGAGACCGAATCCAGTTGA 2124 43.55 MNVIGLHLIILSSSQYIADMSAPSTPSKRPLDENCTESDENGKSKRQKPTGTRSQNLPINKPRGGMVFRVLCHASKVGCVIGKGGAIVLQICQGAGAKVRVEENVSGCDERIVVISESDQENKVEAEQGKDEGTKEENVEENNEEEKEADANEKRKNEEDKDPVPMDNAGFGEGTPSVQNALLLVFKRMVAGEPGPEGGDEGNDESSMFVFRLLVLSNQIGCILGKGGSVIKQMSSESGAQIRILPRDKLPSCASATDELVQISGGVEAVRKALQSVSQQLLDNPPRDNDHFSANTTVQSSHSFWLPPSKTEGRLLNNHSFSSQGVPYSGPPLAHKYYESGGPGQMKPPVEILSFRLLCPDERAGGVIGKGGTIIKSLKQETGCDIKVMEAVPESEDRIIIISGPAHPEDRISVLQDAVLRVQSRIFRAVPDSKEQSVLARLLVSSNQIGCLLGKGGSIIAEMRKSSGAHIRILGKDQVPKCAKADEEVVQINGDFEAVQEAILRITARLQHHFFHDLFPSINYPTNPAFSDQVPVFSSYGVRREFSPPGRYSNLGPSFHIDGGLHPRDDRTAFMHKIHRPGALPNISDRKPWGSRGYVEGGGPLGLSDFAGAPHGRNAGFGGGNQPPIITSTTIEVFVPINIVPVIHGEDGECLKQIRQISDARITITEPKPEAAETVIVISGTPEQTHAAQSLIQAFVMSETESS 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6840483 6845330 - Conep07aG0090800.1 Cone7ag0879 441475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0879 707 ProSiteProfiles Type-1 KH domain profile. 208 277 - -
Cone7ag0879 707 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 204 285 IPR036612 GO:0003723(InterPro)
Cone7ag0879 707 MobiDBLite consensus disorder prediction 32 47 - -
Cone7ag0879 707 Gene3D K Homology domain, type 1 631 704 IPR036612 GO:0003723(InterPro)
Cone7ag0879 707 Gene3D K Homology domain, type 1 206 285 IPR036612 GO:0003723(InterPro)
Cone7ag0879 707 Pfam KH domain 441 507 IPR004088 GO:0003723(InterPro)
Cone7ag0879 707 Pfam KH domain 211 277 IPR004088 GO:0003723(InterPro)
Cone7ag0879 707 Pfam KH domain 355 406 IPR004088 GO:0003723(InterPro)
Cone7ag0879 707 Pfam KH domain 68 123 IPR004088 GO:0003723(InterPro)
Cone7ag0879 707 Pfam KH domain 634 697 IPR004088 GO:0003723(InterPro)
Cone7ag0879 707 CDD KH-I_PEPPER_rpt2_like 439 511 - -
Cone7ag0879 707 MobiDBLite consensus disorder prediction 119 173 - -
Cone7ag0879 707 ProSiteProfiles Type-1 KH domain profile. 632 696 - -
Cone7ag0879 707 SMART kh_6 64 134 IPR004087 GO:0003676(InterPro)
Cone7ag0879 707 SMART kh_6 631 701 IPR004087 GO:0003676(InterPro)
Cone7ag0879 707 SMART kh_6 351 424 IPR004087 GO:0003676(InterPro)
Cone7ag0879 707 SMART kh_6 207 282 IPR004087 GO:0003676(InterPro)
Cone7ag0879 707 SMART kh_6 436 511 IPR004087 GO:0003676(InterPro)
Cone7ag0879 707 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 57 121 IPR036612 GO:0003723(InterPro)
Cone7ag0879 707 ProSiteProfiles Type-1 KH domain profile. 65 125 - -
Cone7ag0879 707 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 432 518 IPR036612 GO:0003723(InterPro)
Cone7ag0879 707 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 632 701 IPR036612 GO:0003723(InterPro)
Cone7ag0879 707 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 351 406 IPR036612 GO:0003723(InterPro)
Cone7ag0879 707 CDD KH-I_PEPPER_rpt2_like 210 281 - -
Cone7ag0879 707 MobiDBLite consensus disorder prediction 119 137 - -
Cone7ag0879 707 ProSiteProfiles Type-1 KH domain profile. 352 419 - -
Cone7ag0879 707 MobiDBLite consensus disorder prediction 148 166 - -
Cone7ag0879 707 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 351 698 - GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER)
Cone7ag0879 707 MobiDBLite consensus disorder prediction 21 60 - -
Cone7ag0879 707 ProSiteProfiles Type-1 KH domain profile. 437 506 - -
Cone7ag0879 707 Coils Coil 135 162 - -
Cone7ag0879 707 CDD KH-I_PEPPER_rpt1_like 355 420 - -
Cone7ag0879 707 Gene3D - 353 514 - -
Cone7ag0879 707 Gene3D - 66 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0879 K21444 - - vvi:100267715 837.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1001 Cone-Chr12:8495177 Cone7ag0879 Cone-Chr7:6840483 5.77E-111 dispersed
Cone6ag0574 Cone-Chr6:2803769 Cone7ag0879 Cone-Chr7:6840483 1.40E-62 dispersed
Cone7ag0879 Cone-Chr7:6840483 Cone8ag1030 Cone-Chr8:9536163 3.54E-105 dispersed
Cone4ag1264 Cone-Chr4:10405265 Cone7ag0879 Cone-Chr7:6840483 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g580 Blo01g01784 . . . Bpe02g00157 . . Bma01g02568 . . . Cma09g00613 . . . Cpe06g00474 . . . . . . . . . . . . . . . Cone4ag1264 Cone7ag0879 . . Lsi04g02311 Csa03g04530 Chy04g00173 . . . Bda11g00816 . . . . . Sed05g1523 Cmo01g01505 Cmo09g00601 . . . Car09g00545 . Cpe02g00498 Bhi09g02548 Tan01g3895 Cmetu04g0312 . Hepe01g2200 . . Cla11g01461 Cam11g1513 Cec11g1551 Cco11g1546 . Cmu11g1494 Cre11g1915 . . . Cme04g00201
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007521 1 1 1 1 1 0 3 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35