Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0880 ATGGCCTCGAAGCTTTTGAATCAAGATCAGCATCGAGCAAATAAGATTGTGGAATCGGTTGGGGTTAGGGTTTCGGGAAATTCTTCTGCCTCGATTCGAAACCCTAGATACTGCTGTAAGCAGTTATCTAATCGTTCCTCTGCGCAGCTGCTGATGCAGAACCACTCCAACTTCAAGCGAAGTGGTGTGCCGTCCAGGTTCATGTTCTTTCAGGACGGATGCTGGGTGGATTTCCCAAGCAAAGTGCTGGAGACCTTGCGATCGGCGTTCATGGAGGGCAAGCCGGTGATTGACTCGCAAATTGAGGGGTCGACGTACCTGTTCGATTTTCTTCGTATGCTGCAGATTGATTTCGAGACTGGATTGCAGAGGTCAATTGCTTGGATCGATCAAAATAGCAAGTGCTTCTTCCCTAGATTGTTCATCGACGAAGAGTCTGAAAATGGTACGGAGAACTCCATGAACCAGAAGATTACAATCGAGATTCAAATTGCCGGGGATTTGGCCAAGAGGAAGAGCCAAGATGAAGAATTGGATGCGGAGGAGGAGGAAGAGATCGAGGTTAATTCAGTAAACCGGCATGGAAATGGCGACGTTTCAAAAAGGCAGCGTATGACTGCATCGGTGTTGGAAAGCCCTAGATGGCCAAGTACGAAGCAGGTGAGAGAAGGAGATAGAGCATACCATGTCATTTTCAATTTTTTTCAGTCTGCTATGACGAAGAATGATCCTGGCGCTACTATTACTGCAATTCATCGGTTTACTCGCACAGAGCCATTGGAGAAAGCTCGCTACGAAGTATTTCAGAAGCAGAATCATATCACGAAAGCTGCCCGTGGAACTTCCAATCTAGTTTATGCTTGGTACGGGTCTTCTTCGGCAAAAGCAGTAGGCGACATATTGAGTCATGGATTTTCAGAGCCCAGCAGGACTACTGGCTCCAATTCTCATGGGATTGGTGTTTATTTATCACCTGTGCAGTTTCCACAGTTGAGTGCTTTAATATCAGAGGCAGATGATAATGGTGAGAAGCATATCATTCTATGCCGGGTTATATTAGGCAATGTGGAAAAAGTGGAGGCGGGTTCCCAACAATCTCATCCTTCTAATGTAGATTTTGACACTGGCGTGGATGACCCGAAAAATCCTAGGTGGTATGTTATTTGGTGCTCGAGTATGAATAGACACATTTTGCCCGAGTATGTTTTGAGCTACAGACCGTCCAATAATGTGCAAGGTCAATTTAAAGGATCGACATTTACGACTAAGGGATGCTCTCTGGTGAAATTGTTGTCAAAGATGAAGGATTCTCTCCCTTCTTCCAAAATTCATGAAGTTGCTTGCCTGTTCAAGAGATACAGAGCCGGAGACCTGGCCAAGGAAGCGATGGTAAAACAGTTGAGGTCAATAGCTGGAGACGAGATTCTACTTTCATCCATCCGTGAGATTCGTGGCTGCGACAGCCGAGAGAGGTTGTTCTGA 1482 45.88 MASKLLNQDQHRANKIVESVGVRVSGNSSASIRNPRYCCKQLSNRSSAQLLMQNHSNFKRSGVPSRFMFFQDGCWVDFPSKVLETLRSAFMEGKPVIDSQIEGSTYLFDFLRMLQIDFETGLQRSIAWIDQNSKCFFPRLFIDEESENGTENSMNQKITIEIQIAGDLAKRKSQDEELDAEEEEEIEVNSVNRHGNGDVSKRQRMTASVLESPRWPSTKQVREGDRAYHVIFNFFQSAMTKNDPGATITAIHRFTRTEPLEKARYEVFQKQNHITKAARGTSNLVYAWYGSSSAKAVGDILSHGFSEPSRTTGSNSHGIGVYLSPVQFPQLSALISEADDNGEKHIILCRVILGNVEKVEAGSQQSHPSNVDFDTGVDDPKNPRWYVIWCSSMNRHILPEYVLSYRPSNNVQGQFKGSTFTTKGCSLVKLLSKMKDSLPSSKIHEVACLFKRYRAGDLAKEAMVKQLRSIAGDEILLSSIREIRGCDSRERLF 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6845762 6848833 + Conep07aG0090900.1 Cone7ag0880 441476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0880 493 Pfam WWE domain 72 127 IPR004170 -
Cone7ag0880 493 ProSiteProfiles RST domain profile. 418 489 IPR022003 -
Cone7ag0880 493 Pfam RCD1-SRO-TAF4 (RST) plant domain 427 482 IPR022003 -
Cone7ag0880 493 SUPERFAMILY ADP-ribosylation 221 409 - -
Cone7ag0880 493 Gene3D - 58 128 IPR037197 -
Cone7ag0880 493 ProSiteProfiles PARP catalytic domain profile. 204 426 IPR012317 GO:0003950(InterPro)
Cone7ag0880 493 ProSiteProfiles WWE domain profile. 53 128 IPR004170 -
Cone7ag0880 493 Pfam Poly(ADP-ribose) polymerase catalytic domain 228 361 IPR012317 GO:0003950(InterPro)
Cone7ag0880 493 Gene3D - 218 406 - -
Cone7ag0880 493 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 35 485 IPR044964 -
Cone7ag0880 493 SUPERFAMILY WWE domain 69 131 IPR037197 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0880 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1262 Cone-Chr4:10401666 Cone7ag0880 Cone-Chr7:6845762 4.19E-232 dispersed
Cone7ag0880 Cone-Chr7:6845762 Cone8ag0490 Cone-Chr8:3472813 4.44E-58 dispersed
Cone7ag0880 Cone-Chr7:6845762 Cone12ag0487 Cone-Chr12:3246133 5.12E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g581 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1262 Cone7ag0880 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010411 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 0 32