Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0894 ATGACTTCTAGTAGTACTACTGCTACTCAGACACCTCAGACGTCCACTCCATCTCCACTGTCCACTGACTCCAACCATCATCATGATCGGACGGCCCAGAAAAAGCCGAGGAATCAGCGCCGACCAAGCAGCAGCAGCACCAAAGATCACACGACCAGTAACTATCGAGGCGTCAGAATGCGAAAACTGGGAAAATGGGTCTCGGAAATCAGAGAGCCACGTAAGAAATCCCGCATTTGGCTTGGAACCTTCTCCACAGCAGAGATGGCCGCCAGGGCCTACGACGTTGCCGCCCTTACTGTCAGAGGCGACTCCGCCATCCTCAACTTTCCCGAGCTCGCTCACTTGCTTCCCCGTCCGGCATCGTTTTCTCCATGTGACGTCCAAGCCGCTGCCGCCATGGCTGCTCACATGTTCCAGTTTGACTCCAAGTCATTGCCTGTGACGGCTTCTGCTACAGCAGCGGCTGCTCTTGTGGTTTTGACCGAGTGGGATGATGACGACGGTGAGCTGAGTGAGATTGTCAAGTTGCCGAGTCTTGGCCCGAGTTACAACGAGTCGAATGGGTTCGGCGAAGATCAGTTTGTGTTTGAAGATTGGGTGTGTGAGTATCCGTTCGACGCCATTGTTCCCGAGTATGGAAGATTTTGA 651 53.76 MTSSSTTATQTPQTSTPSPLSTDSNHHHDRTAQKKPRNQRRPSSSSTKDHTTSNYRGVRMRKLGKWVSEIREPRKKSRIWLGTFSTAEMAARAYDVAALTVRGDSAILNFPELAHLLPRPASFSPCDVQAAAAMAAHMFQFDSKSLPVTASATAAAALVVLTEWDDDDGELSEIVKLPSLGPSYNESNGFGEDQFVFEDWVCEYPFDAIVPEYGRF 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6995942 6996592 - Conep07aG0092300.1 Cone7ag0894 441490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0894 216 SMART rav1_2 54 117 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0894 216 MobiDBLite consensus disorder prediction 1 58 - -
Cone7ag0894 216 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0894 216 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0894 216 Pfam AP2 domain 53 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0894 216 CDD AP2 53 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0894 216 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 33 187 IPR051032 -
Cone7ag0894 216 MobiDBLite consensus disorder prediction 1 22 - -
Cone7ag0894 216 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0894 216 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677(InterPro)
Cone7ag0894 216 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0894 216 FunFam Ethylene-responsive transcription factor 2 53 112 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0772 Cone-Chr4:4457176 Cone7ag0894 Cone-Chr7:6995942 7.48E-43 dispersed
Cone4ag0949 Cone-Chr4:8070103 Cone7ag0894 Cone-Chr7:6995942 3.27E-41 dispersed
Cone7ag0709 Cone-Chr7:4093784 Cone7ag0894 Cone-Chr7:6995942 4.18E-42 dispersed
Cone7ag0894 Cone-Chr7:6995942 Cone7ag1181 Cone-Chr7:8804049 4.47E-43 dispersed
Cone17ag1123 Cone-Chr17:8317270 Cone7ag0894 Cone-Chr7:6995942 2.87E-39 wgd
Cone20ag0599 Cone-Chr20:3503235 Cone7ag0894 Cone-Chr7:6995942 3.81E-39 wgd
Cone4ag1240 Cone-Chr4:10302694 Cone7ag0894 Cone-Chr7:6995942 1.66E-96 wgd
Cone6ag1474 Cone-Chr6:11740377 Cone7ag0894 Cone-Chr7:6995942 1.72E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46507 PF00071 Ras 5.60E-55 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0894 K09286 - csv:101217333 166.777