Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0930 ATGGAGAAACTCCCACTTCTATCCCTCACTTTCGTTGCAGCCTTTCTACTTCTTTTCCCTCCTTGTACTTGCAGCATTGTTGCTCAGATGACAGAGATGGAAGCATTGCTTCAGTTCAAAAACCAGCTCAAAGACCCCTTAAACTTCCTCCATTCTTGGAGCAATTCCAATGCACCATGTAGTTTCCCGGGCGTTACTTGCAACAACGTTACCGCAAAAGTTTCCGAAATTTCGCTCGATAATAAGGCCCTTTCTGGTAAGATTTCACCTTCCATTTCTGTCCTTGAATATCTTACTACACTTTCCTTGCCCACAAACAACATTTCTGGCAAGCTTCCGGTCCAATTGACCGGGTGCAGAAATCTTAAAGTGTTGAATCTTACCGGGAATCAATTGGTGGGGCCCATACCTGATCTATCTGAGCTGGTAAATCTCGAGGTTCTCGATTTATCATTCAACTATTTTAACGGTGAGTTTCCAACTTGGGTTGGGAATCTAACCGGATTGGTTTCTTTAGGACTAGGAGCTAATGAATATAAGGAGGAGGAAATTCCGGAATGTCTTGGAGATTTAAAAAACTTGACATGGTTGTATTTGGCCGATTCACATTTGAGGGGTGAGATTCCGGAATCTCTTTTCGAGATAGAGGCCCTGGAGACGTTGGATCTTTCCAGAAATAGAATCTCTGGGATTCTTTCTCGTTCGATATCCAAGCTGCGGAATCTGCGTAAGATCGAACTATTCATAAACAATTTGACCGGAGAAATCCCACCAGATGTTGCAAATCTCACCCTTCTGCAAGAATTTGATATTTCTTCTAACAAGTTGTATGGGAAGTTACCTCAAGAGATTGGAAATCTGGAAAATTTAGTGGTTTTTCAGTTGTATGAAAACAACTTTTCCGGAGAGATCCCTTCCGGTTTCGGAAATATGCAGCATCTAATCGCTTTTTCAATCTACAGAAACAGTTTTTCAGGAAACTTTCCACCAAATTTTGGCAGGTTCTCACCATTGGTTAGTTTTGAGATATCAGAGAATAATTTTTCCGGACGTTTTCCTCAGTTCTTATGTGAGAGTAGAAAGTTGCAGTTCTTGCTTGCATTGGATAATAAATTTTCAGGAGAGTTTCCGGATTCATTTTCGGACTGCAAATCTCTGATAAGGTTCAGAATCAGTAACAACCAGTTTTCCGGAAAAATCGCAGATGCTCTGTGGGCCCTGCCTAATGCAAGAATAATCGATTTTAGTGATAATGAAATCAGTGGAGGTATTAACCCGAGTATCGGATTTTCTACCAGCTTGACCCAGTTGGTTTTACTGAACAATAGATTCTCGGGCGAGATTCCATCTGAGCTCGGAAAGTTAACAAGCTTGGAGAGGATCCATTTGGGTTATAACAACTTCTCAGGCGTGATTCCTTCTCAAATCAGTGCTTTGACTCAATTATCATACTTGCATTTGGAGCATAATTCCTTAACCGGATGGATTCCTTCAGAAATTGGAAATTGTATAAGACTGGTTGACATGAATCTTGCAAGGAATTCTCTGACCGGAAACATCCCGAGATCTCTTTCACTCTTAGGCTCTTTGAATTCTCTAAACCTTTCGCAGAACAAACTCGATGGTTCAATTCCGGAGAATCTAAAGAAAATGAAGTTAAGTTCTGTTGATTTGTCGAAAAACCAGCTGTCGGGAGTAGTTCCTTTTGATCTTCTAACAATGGGTGGAGATGGTGCTTTTGTTGAAAACAAGGGACTCTGCATTGATCTTGATCATCATTTACCCATAAATTCTAGCTTGAGCGGCTGTAGTAAACATCGTGGCCAGAAGGGTTTACATAATCTGGTTTTCTTCTCTGTGATGTCATCTGCCTTGGTTTTTGTCTTGGCCGGGTTATTGCTTGTTAGTTACAAGAACTTCAAGCGCTGCGAAACCGACAAATTAGAGACCAGGGTTGAAGAAGAAGAGAAAGAGGTAAAACCAAAGTGGAAAGTTGCATCATTTCACCAAGTACAGTTCGACGCAGATGAAATATGCAACTTAAAGGAAGAGAATTTGATTGGAAGTGGGGGAACGGCAAGAGTTTACCGTTTAGATTTGAAGAAAAGTGGTGTAACAGTAGCCGTTAAGTGGCTATGGAAAGGAAATTCTGCGAAGGTTTTAGCTGCTGAAATGGAGATCATGGGGAAGATTAGACACAAGAATATATTAAAGCTTTATGGCAGTTTAATCAAAGGGGAGTCTAGTTATCTTATGTTTGAGTACATGTCAAATGGGAATCTATTTCAAGCGCTTGAAAGACCGATCAAGGGCGGACGGTCCGAGTTGGATTGGCATCAGAGGTATAAGATTGCTTTGGGCATTGCAAGGGGGATTGCATACTTACACCAAGATTGTTCTCTGCCTATTATTCACCGAGATATAAAATCGACCAATATACTCCTTGATGAAGATTATGAAGCGAAAATCGCCGATTTTGGGGTTGCAAAAGTTGCAGAGAAGTCTCTGAATTTTTCCGAGTGTACCTCTTTTGCTGGCACTCATGGTTACATTGCTCCTGAGCTGGCCTATACGGCCAAGGTGAATGAGAAAAGCGATGTATATAGTTTTGGAGTAGTTTTGCTGGAGCTGATTACAGGTAGAAGACCAATTGAAGATGAATATGGGGAAGGGAAAGACATTGTTTATTGGGTCTCTATGCATCTAGACAACCGGGAAAGTGTCGAGAAGGTTCTTGATGGGAGCGTTGTTTCCGACTCGGTTCGAGATGACATGATCAAGGTCTTGAAGATTGCTATTCGTTGCACGACAAAGCTGCATTCTCTACGTCCTTGTATGAGAGAGGTCGTCAAGATGCTAGTCGATGCCGATCAGTGCAATTTACGTTCGGTCAAGACTCAAGAGTAA 2907 41.52 MEKLPLLSLTFVAAFLLLFPPCTCSIVAQMTEMEALLQFKNQLKDPLNFLHSWSNSNAPCSFPGVTCNNVTAKVSEISLDNKALSGKISPSISVLEYLTTLSLPTNNISGKLPVQLTGCRNLKVLNLTGNQLVGPIPDLSELVNLEVLDLSFNYFNGEFPTWVGNLTGLVSLGLGANEYKEEEIPECLGDLKNLTWLYLADSHLRGEIPESLFEIEALETLDLSRNRISGILSRSISKLRNLRKIELFINNLTGEIPPDVANLTLLQEFDISSNKLYGKLPQEIGNLENLVVFQLYENNFSGEIPSGFGNMQHLIAFSIYRNSFSGNFPPNFGRFSPLVSFEISENNFSGRFPQFLCESRKLQFLLALDNKFSGEFPDSFSDCKSLIRFRISNNQFSGKIADALWALPNARIIDFSDNEISGGINPSIGFSTSLTQLVLLNNRFSGEIPSELGKLTSLERIHLGYNNFSGVIPSQISALTQLSYLHLEHNSLTGWIPSEIGNCIRLVDMNLARNSLTGNIPRSLSLLGSLNSLNLSQNKLDGSIPENLKKMKLSSVDLSKNQLSGVVPFDLLTMGGDGAFVENKGLCIDLDHHLPINSSLSGCSKHRGQKGLHNLVFFSVMSSALVFVLAGLLLVSYKNFKRCETDKLETRVEEEEKEVKPKWKVASFHQVQFDADEICNLKEENLIGSGGTARVYRLDLKKSGVTVAVKWLWKGNSAKVLAAEMEIMGKIRHKNILKLYGSLIKGESSYLMFEYMSNGNLFQALERPIKGGRSELDWHQRYKIALGIARGIAYLHQDCSLPIIHRDIKSTNILLDEDYEAKIADFGVAKVAEKSLNFSECTSFAGTHGYIAPELAYTAKVNEKSDVYSFGVVLLELITGRRPIEDEYGEGKDIVYWVSMHLDNRESVEKVLDGSVVSDSVRDDMIKVLKIAIRCTTKLHSLRPCMREVVKMLVDADQCNLRSVKTQE 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7273106 7276110 - Conep07aG0095900.1 Cone7ag0930 441526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0930 968 SMART serkin_6 681 946 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0930 968 Pfam Leucine rich repeat 193 252 IPR001611 GO:0005515(InterPro)
Cone7ag0930 968 Pfam Leucine rich repeat 433 492 IPR001611 GO:0005515(InterPro)
Cone7ag0930 968 Gene3D Ribonuclease Inhibitor 29 308 IPR032675 -
Cone7ag0930 968 SMART LRR_typ_2 527 550 IPR003591 -
Cone7ag0930 968 SMART LRR_typ_2 215 238 IPR003591 -
Cone7ag0930 968 SMART LRR_typ_2 263 287 IPR003591 -
Cone7ag0930 968 SMART LRR_typ_2 142 166 IPR003591 -
Cone7ag0930 968 SMART LRR_typ_2 455 478 IPR003591 -
Cone7ag0930 968 SMART LRR_typ_2 479 503 IPR003591 -
Cone7ag0930 968 ProSiteProfiles Leucine-rich repeat profile. 121 143 IPR001611 GO:0005515(InterPro)
Cone7ag0930 968 PRINTS Leucine-rich repeat signature 218 231 - -
Cone7ag0930 968 PRINTS Leucine-rich repeat signature 527 540 - -
Cone7ag0930 968 Pfam Leucine Rich Repeat 289 311 IPR001611 GO:0005515(InterPro)
Cone7ag0930 968 Pfam Leucine Rich Repeat 266 287 IPR001611 GO:0005515(InterPro)
Cone7ag0930 968 Pfam Leucine Rich Repeat 144 166 IPR001611 GO:0005515(InterPro)
Cone7ag0930 968 Pfam Leucine Rich Repeat 121 138 IPR001611 GO:0005515(InterPro)
Cone7ag0930 968 Pfam Leucine Rich Repeat 529 551 IPR001611 GO:0005515(InterPro)
Cone7ag0930 968 Pfam Protein kinase domain 683 951 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0930 968 Gene3D Ribonuclease Inhibitor 313 595 IPR032675 -
Cone7ag0930 968 Pfam Leucine rich repeat N-terminal domain 32 68 IPR013210 -
Cone7ag0930 968 ProSiteProfiles Protein kinase domain profile. 681 961 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0930 968 FunFam Receptor-like protein kinase HSL1 292 595 - -
Cone7ag0930 968 FunFam Probable inactive receptor kinase RLK902 29 187 - -
Cone7ag0930 968 Gene3D Transferase(Phosphotransferase) domain 1 760 967 - -
Cone7ag0930 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag0930 968 Gene3D Phosphorylase Kinase; domain 1 679 759 - -
Cone7ag0930 968 CDD STKc_IRAK 687 953 - -
Cone7ag0930 968 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 756 968 - -
Cone7ag0930 968 SUPERFAMILY Protein kinase-like (PK-like) 678 953 IPR011009 -
Cone7ag0930 968 SUPERFAMILY L domain-like 54 306 - -
Cone7ag0930 968 SUPERFAMILY RNI-like 250 566 - -
Cone7ag0930 968 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 370 953 IPR051564 GO:0016020(PANTHER)
Cone7ag0930 968 Coils Coil 638 658 - -
Cone7ag0930 968 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524(InterPro)
Cone7ag0930 968 FunFam Leucine-rich repeat receptor protein kinase EMS1 208 291 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0878 Cone-Chr7:6807374 Cone7ag0930 Cone-Chr7:7273106 1.01E-84 dispersed
Cone7ag0930 Cone-Chr7:7273106 Cone9ag0992 Cone-Chr9:5100982 3.06E-69 dispersed
Cone4ag1197 Cone-Chr4:10087329 Cone7ag0930 Cone-Chr7:7273106 5.11E-298 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83039 PF02466 Tim17 3.30E-27 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0930 - - - 0.0