Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0962 ATGGCTGGTACTACTAGTTCACGTTACACCCACGGTCCAGCCACTTCTAGCTATAGAGGAGTCCGAAAGAGAAAATGGGGCAAATGGGTATCCGAAATCAGAGAACCCGGGACCAAAACCAGAATCTGGCTAGGCAGCTTCGAGACTCCTGAGATGGCTGCCGTGGCCTATGATGTGGCGGCTCTACATTTCCGCGGAACAGAAGCTCGTTTAAATTTCCCGGAAATGGTCAATAGCCTTCCTAATCCGGCTAGTTCAAATCCGGAAGATATACGCATGGCGGCCCATGAGGCGGCCTTGAGGCTATGCGGCCCACCATCTCAGGAAGAGGCAATTCGTGATCTTCAGCTTGTTGGCTCCAGCAGCTCGAACATGGCGGGCCCAGTGACGGTTAGGCTCTCACCGAGCCAGATTCAGGCGATTAACGAGTCCCCGTTGGACTCACCACAGATGTGGATGCAAATGTCCGAGTCGTTTATGGTAGAACGAAGTATGATGTTCGACGATAACATTGACATTGAGGATCATAATGAATATTATTGGCAGTATATGCAGTCTGATTCACTTTGGGATCCGTAA 579 50.43 MAGTTSSRYTHGPATSSYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAVAYDVAALHFRGTEARLNFPEMVNSLPNPASSNPEDIRMAAHEAALRLCGPPSQEEAIRDLQLVGSSSSNMAGPVTVRLSPSQIQAINESPLDSPQMWMQMSESFMVERSMMFDDNIDIEDHNEYYWQYMQSDSLWDP 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7465563 7466141 + Conep07aG0099100.1 Cone7ag0962 441558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0962 192 Gene3D AP2/ERF domain 17 76 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0962 192 Pfam AP2 domain 17 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0962 192 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677(InterPro)
Cone7ag0962 192 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0962 192 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0962 192 CDD AP2 16 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0962 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 156 IPR051032 -
Cone7ag0962 192 SMART rav1_2 17 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0962 192 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0962 192 FunFam Ethylene-responsive transcription factor 2 16 75 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1590 Cone-Chr4:12138815 Cone7ag0962 Cone-Chr7:7465563 1.77E-24 dispersed
Cone6ag1406 Cone-Chr6:11316885 Cone7ag0962 Cone-Chr7:7465563 4.50E-23 dispersed
Cone7ag0962 Cone-Chr7:7465563 Cone7ag1181 Cone-Chr7:8804049 3.59E-31 dispersed
Cone4ag1168 Cone-Chr4:9947641 Cone7ag0962 Cone-Chr7:7465563 1.03E-118 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46512 PF01985 CRS1_YhbY 7.90E-17 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0962 - - - 0.0