Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone7ag0983 | ATGGTGCCTGGTGTGGTCTTTTCAGGGGCGGCCTGGCAGGCGGAGCAGCTCAGAAAGGACGGGAACACCTTCTTCAATAAAGATCGTTTCGGAGCGGCCATCGATGCCTACACTGAGGCAATTACCCTGTGCCCTAATGTTGCTGTGTATTGGACAAACCGTGCTTTATGTCATCGAAGGCGCAATGACTGGACGAAGGTGGAGAACGACTGTAGAAGAGCACTTCAGCTTGATAGCAATTCTGTCAAGGCCCACTATATGTTGGGACTGGCATTAATACAGAAAGATGATTACTCGGAAGGGATCAAGCAATTGGAGAAGGCCTTGGAACTTGGTAGGGGTGGCAAGCGGCAGAGTTATATGGTGGAAGAGATTTGGCAGGAGCTTGCAAAAGCTAAATACTCAGAATGGGAGCTAGCATCGACCAAACATTCATGGGAATTGCAAAACTTGAAAGAAGCCTGTGAGACTGCTCTAAAGCAAAAGCATTTTCTTGACAACTCTGACTCCGAAGGATTCTTGGATGAAGCTGACATTACCATGACAAAACAATTAGATACTCTAGATTGTGTCTTCCGGGAAGCTTCTGAAGGTGTAGTTCCATCTGAGGTACCTGATTACCTTTGTTGTAAAATCACACTCGATATTCTTCGTGATCCTGTCATCACTCCCAGTGGGATTACATATGAGAGAGAGGTGATTCTTGACCATATTCACAAGGTGGGTAATTTTGACCCTGTGACACGAGAACCTCTCTATGAATCTCAGCTTGTACCAAACCTGGCCCTAAAGGAAGCAGTCCAAGCATTTCTAGAAAGACATGGGTGGGCCTACAAGATGAATTGA | 846 | 46.1 | MVPGVVFSGAAWQAEQLRKDGNTFFNKDRFGAAIDAYTEAITLCPNVAVYWTNRALCHRRRNDWTKVENDCRRALQLDSNSVKAHYMLGLALIQKDDYSEGIKQLEKALELGRGGKRQSYMVEEIWQELAKAKYSEWELASTKHSWELQNLKEACETALKQKHFLDNSDSEGFLDEADITMTKQLDTLDCVFREASEGVVPSEVPDYLCCKITLDILRDPVITPSGITYEREVILDHIHKVGNFDPVTREPLYESQLVPNLALKEAVQAFLERHGWAYKMN | 281 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 7591813 | 7594302 | + | Conep07aG0101200.1 | Cone7ag0983 | 441579 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone7ag0983 | 281 | CDD | RING-Ubox_CHIP | 204 | 274 | IPR045202 | - | |
| Cone7ag0983 | 281 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE CHIP | 10 | 280 | - | GO:0000209(PANTHER)|GO:0005737(PANTHER)|GO:0006515(PANTHER)|GO:0043161(PANTHER)|GO:0045862(PANTHER)|GO:0051087(PANTHER)|GO:0061630(PANTHER)|GO:0071218(PANTHER) | |
| Cone7ag0983 | 281 | SMART | Ubox_2 | 207 | 270 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Cone7ag0983 | 281 | ProSiteProfiles | TPR repeat profile. | 14 | 47 | IPR019734 | GO:0005515(InterPro) | |
| Cone7ag0983 | 281 | SMART | tpr_5 | 48 | 81 | IPR019734 | GO:0005515(InterPro) | |
| Cone7ag0983 | 281 | SMART | tpr_5 | 14 | 47 | IPR019734 | GO:0005515(InterPro) | |
| Cone7ag0983 | 281 | SMART | tpr_5 | 82 | 115 | IPR019734 | GO:0005515(InterPro) | |
| Cone7ag0983 | 281 | Gene3D | Tetratricopeptide repeat domain | 10 | 144 | IPR011990 | GO:0005515(InterPro) | |
| Cone7ag0983 | 281 | SUPERFAMILY | RING/U-box | 197 | 278 | - | - | |
| Cone7ag0983 | 281 | ProSiteProfiles | TPR repeat profile. | 82 | 115 | IPR019734 | GO:0005515(InterPro) | |
| Cone7ag0983 | 281 | ProSiteProfiles | U-box domain profile. | 203 | 277 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Cone7ag0983 | 281 | Pfam | Anaphase-promoting complex, cyclosome, subunit 3 | 48 | 108 | - | - | |
| Cone7ag0983 | 281 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 202 | 280 | IPR013083 | - | |
| Cone7ag0983 | 281 | Pfam | U-box domain | 204 | 276 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Cone7ag0983 | 281 | SUPERFAMILY | TPR-like | 14 | 115 | IPR011990 | GO:0005515(InterPro) | |
| Cone7ag0983 | 281 | Coils | Coil | 148 | 168 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone7ag0983 | Cone-Chr7:7591813 | Cone11ag0256 | Cone-Chr11:1235455 | 6.07E-09 | dispersed | |
| Cone4ag1147 | Cone-Chr4:9846684 | Cone7ag0983 | Cone-Chr7:7591813 | 6.81E-143 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone7ag0983 | K09561 | - | csv:101215457 | 431.795 |