Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0983 ATGGTGCCTGGTGTGGTCTTTTCAGGGGCGGCCTGGCAGGCGGAGCAGCTCAGAAAGGACGGGAACACCTTCTTCAATAAAGATCGTTTCGGAGCGGCCATCGATGCCTACACTGAGGCAATTACCCTGTGCCCTAATGTTGCTGTGTATTGGACAAACCGTGCTTTATGTCATCGAAGGCGCAATGACTGGACGAAGGTGGAGAACGACTGTAGAAGAGCACTTCAGCTTGATAGCAATTCTGTCAAGGCCCACTATATGTTGGGACTGGCATTAATACAGAAAGATGATTACTCGGAAGGGATCAAGCAATTGGAGAAGGCCTTGGAACTTGGTAGGGGTGGCAAGCGGCAGAGTTATATGGTGGAAGAGATTTGGCAGGAGCTTGCAAAAGCTAAATACTCAGAATGGGAGCTAGCATCGACCAAACATTCATGGGAATTGCAAAACTTGAAAGAAGCCTGTGAGACTGCTCTAAAGCAAAAGCATTTTCTTGACAACTCTGACTCCGAAGGATTCTTGGATGAAGCTGACATTACCATGACAAAACAATTAGATACTCTAGATTGTGTCTTCCGGGAAGCTTCTGAAGGTGTAGTTCCATCTGAGGTACCTGATTACCTTTGTTGTAAAATCACACTCGATATTCTTCGTGATCCTGTCATCACTCCCAGTGGGATTACATATGAGAGAGAGGTGATTCTTGACCATATTCACAAGGTGGGTAATTTTGACCCTGTGACACGAGAACCTCTCTATGAATCTCAGCTTGTACCAAACCTGGCCCTAAAGGAAGCAGTCCAAGCATTTCTAGAAAGACATGGGTGGGCCTACAAGATGAATTGA 846 46.1 MVPGVVFSGAAWQAEQLRKDGNTFFNKDRFGAAIDAYTEAITLCPNVAVYWTNRALCHRRRNDWTKVENDCRRALQLDSNSVKAHYMLGLALIQKDDYSEGIKQLEKALELGRGGKRQSYMVEEIWQELAKAKYSEWELASTKHSWELQNLKEACETALKQKHFLDNSDSEGFLDEADITMTKQLDTLDCVFREASEGVVPSEVPDYLCCKITLDILRDPVITPSGITYEREVILDHIHKVGNFDPVTREPLYESQLVPNLALKEAVQAFLERHGWAYKMN 281
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 7591813 7594302 + Conep07aG0101200.1 Cone7ag0983 441579
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0983 281 CDD RING-Ubox_CHIP 204 274 IPR045202 -
Cone7ag0983 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 10 280 - GO:0000209(PANTHER)|GO:0005737(PANTHER)|GO:0006515(PANTHER)|GO:0043161(PANTHER)|GO:0045862(PANTHER)|GO:0051087(PANTHER)|GO:0061630(PANTHER)|GO:0071218(PANTHER)
Cone7ag0983 281 SMART Ubox_2 207 270 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone7ag0983 281 ProSiteProfiles TPR repeat profile. 14 47 IPR019734 GO:0005515(InterPro)
Cone7ag0983 281 SMART tpr_5 48 81 IPR019734 GO:0005515(InterPro)
Cone7ag0983 281 SMART tpr_5 14 47 IPR019734 GO:0005515(InterPro)
Cone7ag0983 281 SMART tpr_5 82 115 IPR019734 GO:0005515(InterPro)
Cone7ag0983 281 Gene3D Tetratricopeptide repeat domain 10 144 IPR011990 GO:0005515(InterPro)
Cone7ag0983 281 SUPERFAMILY RING/U-box 197 278 - -
Cone7ag0983 281 ProSiteProfiles TPR repeat profile. 82 115 IPR019734 GO:0005515(InterPro)
Cone7ag0983 281 ProSiteProfiles U-box domain profile. 203 277 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone7ag0983 281 Pfam Anaphase-promoting complex, cyclosome, subunit 3 48 108 - -
Cone7ag0983 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 280 IPR013083 -
Cone7ag0983 281 Pfam U-box domain 204 276 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone7ag0983 281 SUPERFAMILY TPR-like 14 115 IPR011990 GO:0005515(InterPro)
Cone7ag0983 281 Coils Coil 148 168 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0983 Cone-Chr7:7591813 Cone11ag0256 Cone-Chr11:1235455 6.07E-09 dispersed
Cone4ag1147 Cone-Chr4:9846684 Cone7ag0983 Cone-Chr7:7591813 6.81E-143 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0983 K09561 - csv:101215457 431.795