Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0984 ATGGCAAAGACGAGACTCTACGATTCCGATCCGGCGCTGGCGGTGGCTGATTTGAAGTTAGAGCTTCAGAGATTGTTCAGGACTATCATCGACGATGACGATTACTGTGTCGAAACAATCGATCGGGCTAAAGAGACACTCGCTATCCTCAAGGACTTGAAGCTTCTCCGGAAGAGAGCGCTCTCGTCGGAGCTCCATCAGACTACAAACACTTGCCCCGACGAATTTCGCTGTCCGCTTTCTAAGGAATTGATGAGAGATCCTGTGATTTTGTCTACCGGTGAGACATATGACAGGCCCTTCATACAAAGATGGTTAAAAGCAGGTAACAGGACATGCCCTAAGACTCAACAAGTTCTTTCACACACAATCCTTACCCCCAATCACTTGATCCGAGGGATGATAAGTCAGTGGTGTAAAGACCAAGGAATAGATTCATCAAATCCTGCTCAATACCTTAATGAGGAGGGCGTCACTGAAGCAGATCGGAACCATTTCCAAATCTTGCTCGAGAGGATGTCTTCATCAATTCCCTCCAAGCAGAAAGAGGCTGCAAAAGAGCTTCGCTCCTTGACAAAGCAGATGCCCTCATTCCGGGCACTTTTCGGAGAGTCTGTAAATTCCATCCCTTCATTACTTGCTCCCCTCTCTCAGGGCAAGTCGCATGATAGTGTTATTATGCACTCGGATCTCCAAGAAGATGTGATTACAACGCTTTTAAACCTATCAATCCATGATAGCAATAAGAAGCTTGTGGGTGAGACTCCTACGGTGATCCCTCTCCTTGTGCATGCATTGAGATCAGGCACCATAGAGACGAGGAGAAATGCAGCTGCTACCCTTTTCACTTTATCAGCTCTTGATTCAAACAAGAACCTTATTGGGAAATCCGGTGCCTTGAAACCTCTCATTGACCTCTTAGAAGAAGGGCATCCTCTTGCCATGAAAGATGTAGCCTCTGCCATTTTCAATCTCTGTATTTTACATGAGAACAAGGCGAGAGCGGTAGGGGATGGAGCGGTAAGAGTGATGGTGAAGAAGATTGTTAATGGGGTCCATGTGGATGAGTTACTAGCCATCCTTGCAATGCTTTCGAGCCATCAAAAGGCCGTAGACGAAATGGGAGAGCTTGGAGCTGTTCCTTGCTTGCTAAGCATCATAAGGGAGAGTGCTTGTGGAAGAAACAAGGAGAACTGCATTGTAATCCTGCATGCTGTTTGTTTGAATAATAGAACAAAGTGGAAGGAATTGAGGGAAGAGGAGAAGAGACATGGAACTATCTCCGAGCTTTCTCGGAATGGAAGTTCTAGGGCCAAGAGAAAGGCCAGTGGCATACTCGAGAGACTTAACAGGGCTGTTAATATCACCCACACTGCATAA 1380 46.3 MAKTRLYDSDPALAVADLKLELQRLFRTIIDDDDYCVETIDRAKETLAILKDLKLLRKRALSSELHQTTNTCPDEFRCPLSKELMRDPVILSTGETYDRPFIQRWLKAGNRTCPKTQQVLSHTILTPNHLIRGMISQWCKDQGIDSSNPAQYLNEEGVTEADRNHFQILLERMSSSIPSKQKEAAKELRSLTKQMPSFRALFGESVNSIPSLLAPLSQGKSHDSVIMHSDLQEDVITTLLNLSIHDSNKKLVGETPTVIPLLVHALRSGTIETRRNAAATLFTLSALDSNKNLIGKSGALKPLIDLLEEGHPLAMKDVASAIFNLCILHENKARAVGDGAVRVMVKKIVNGVHVDELLAILAMLSSHQKAVDEMGELGAVPCLLSIIRESACGRNKENCIVILHAVCLNNRTKWKELREEEKRHGTISELSRNGSSRAKRKASGILERLNRAVNITHTA 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7594941 7597222 - Conep07aG0101300.1 Cone7ag0984 441580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0984 459 CDD RING-Ubox_PUB 73 125 IPR045210 -
Cone7ag0984 459 ProSiteProfiles U-box domain profile. 71 145 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone7ag0984 459 SUPERFAMILY RING/U-box 61 144 - -
Cone7ag0984 459 PANTHER U BOX DOMAIN-CONTAINING 44 450 - -
Cone7ag0984 459 SMART arm_5 287 327 IPR000225 GO:0005515(InterPro)
Cone7ag0984 459 SMART arm_5 245 286 IPR000225 GO:0005515(InterPro)
Cone7ag0984 459 Pfam U-box domain 73 142 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone7ag0984 459 FunFam RING-type E3 ubiquitin transferase 156 455 - -
Cone7ag0984 459 FunFam RING-type E3 ubiquitin transferase 71 145 - -
Cone7ag0984 459 SUPERFAMILY ARM repeat 163 449 IPR016024 -
Cone7ag0984 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 149 IPR013083 -
Cone7ag0984 459 SMART Ubox_2 75 138 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone7ag0984 459 Gene3D - 150 454 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0625 Cone-Chr10:2978931 Cone7ag0984 Cone-Chr7:7594941 2.29E-129 dispersed
Cone5ag1640 Cone-Chr5:11573290 Cone7ag0984 Cone-Chr7:7594941 2.06E-40 dispersed
Cone7ag0984 Cone-Chr7:7594941 Cone8ag1127 Cone-Chr8:9943296 1.10E-24 dispersed
Cone7ag0984 Cone-Chr7:7594941 Cone7ag0992 Cone-Chr7:7652318 1.41E-19 proximal
Cone4ag1146 Cone-Chr4:9843711 Cone7ag0984 Cone-Chr7:7594941 2.65E-262 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0984 K27971 - mdm:103412155 649.432