Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0992 ATGGAAACCGCATCTGTAAGATGCCTTATTAACAGTATATCGAGATTCATTCATCTAGTTTCCTGCCAGACAATAAAGCCTCTGCCTATTCAGAAGGAGTATACACATGTGGTTGGTTTGTTAAAGCTTTTGAAACCAATTCTTGATGATGTTGTTGACTACAAAATCCCTTCGGACGAGTTCCTTTTTAGAGAGTGTGAAGTGTTGGATATACTTGTTAACGAGGCTCGGGAATTTATGGAAAATTGGGGCCCAAAGATGAGCAGAATTTGTGCCGTTTTGAGGAGTGAGCCATTGTTGATGAAAATAGAAAGTTCCTTGCAAGCAATATGTCGAACGATTAGCAAATTGTCTCAGACTTCTTCATCTAGCTCAAAACAAACAGCTCTTCAGCAATGTATGCAAAGCCTTCAATCTTTAAAGCAAGAAAGAATATCCCGATACATAGAAGAGGCCTTGAAGAGTCAAAAAGATGATATCAGTCCTTGTAACGAACGTCTCATCAGAATTACCAAGTCACTGGGTCTGAACTCAAACCAGGAACTTTTGAAAGAGAGTGTGGCCGTGGAAAAGGAGAGAATGAAAGCCGAAGAAAATGAAGCGAAGAAGGAATTACAGCTAATGAACCAAATAGTGGATCTTGTCTCTTATATAAGAGATTGGATGGTTAAAACTGAATGCGTTGAGGGGATAAATGGGGTCTCAATTCCTTCCTATTTCCGCTGCCCTTTGTCATGGGAACTTATGTTGGATCCAGTAATAGTGGCATCAGGCCAAACTTATGATCGGGCCTCGATACAAAAGTGGCTTGATCATGGGCTGATCATTTGTCCAATAACCCGTCGGGTGCTTTCACATACAAATCTCATCCCTAATGATACTGTCAAAGCTATGATAGCAAATTGGTGTGAAGAAAATAAAGTGAAAATTTCCGACAAATTTGAGCACAATCTTTCCCCTTTTTCTTCGTCTCCAACAGGTCATGTAGCTAAGAATTCCAAGGCAAGATCATTCCCGGAGGTTGGTAATGGGCCTGAGAATAAAAAAGAAGACATATCTTCCCTATCTAGTGGGGAAAGGTCCAACGGATGCAAGAGCAGTGAAACTGAAAAGTCTGGCCATTCATATATTTATAGGAGTGGATCAGCTTCCAGTGCCATGTCCACTATTGATCATGTTTTATCAGTATTGAATGAAAGTGTAGTCAAATTATCAGGTGAAATCACATCCAAATCCCCCAAAACTTCTCCAAATAAAGAATCTCCATATTCTTCAGGGTTAGCAGAACAACATTTGCAGAGCATAAAAACAAAAGTGGACATCAAAGAGAATGAGACTTGTACACAAGTGAGAGATCAAGCACTTTTGAACTCAGAATCAGGATCTAATACATCGATTCCCGACTCCCATATAAAGAAATTAGTCAAAGATCTCAAGAGCCAAAGCGATGACCTGAAAACTAAAGCTGCCAGAGAATTGAGGCTCCTTGCAAAGGACAACAAGGAAAATCGTGTCATCATAGGCAGTTGTGGGGCTATATCCTATTTAATTTCACTCCTCTATTCTAAGGAGGAGTTAACTCAAGAGCATTCTGTAACAGCCCTTTTGAATCTATCAATTGACGATAACATTAAGGCCATGATTGCAGAGGCAGGAGCCGTAGAACCGCTTGTTCACGTGCTGAAAACCGGTAATGATGTAGCCAAAGAGAATTCTGCTGCTGCCCTATTCAGTCTCTCTCTATTAGAAGAATATAAGGCGAAAATCGGCCGTTCTGGTGCAGTTATAGCATTAGTGGACCTTTTAGCTTCAGGGACTCTTAGAGGGAAGAAAGATGCAGCTACAGCTCTTTTTAACCTATCAATTTTCCATGAAAATAAGTCCCGGATAGTTCAAGCAGGAGCTGTGAAGTATCTTATTGAGTTGTTAGACCTTTCTACAGGGATGACTGATAAGGCTACTGCCCTTCTAGCAAACTTGTCCACAGTTGGGGAGGGCCGTTTGGCAATTGGGAAACAAGGGGGAATTCCTTTATTGGTTGAAATTCTTGAATCTGGGTCTCAGAGGGGAAAGGAGAATGCTGCCTCCATACTATTGCAGCTATGTCTTAATAGTTCTAAGTTCTGTACATTGGTTTTGCAAGAAGGAGCCGTGCCTCCCCTCGTTAGTTTATCTCAGTGTGGCACGACAAGAGCAAAGGAAAAGGCACAGCAACTTCTGAGTCACTTTCGGAATCAGCGTGAAGCAGGTGTAAGGAAATTGAAAACATGA 2271 41.22 METASVRCLINSISRFIHLVSCQTIKPLPIQKEYTHVVGLLKLLKPILDDVVDYKIPSDEFLFRECEVLDILVNEAREFMENWGPKMSRICAVLRSEPLLMKIESSLQAICRTISKLSQTSSSSSKQTALQQCMQSLQSLKQERISRYIEEALKSQKDDISPCNERLIRITKSLGLNSNQELLKESVAVEKERMKAEENEAKKELQLMNQIVDLVSYIRDWMVKTECVEGINGVSIPSYFRCPLSWELMLDPVIVASGQTYDRASIQKWLDHGLIICPITRRVLSHTNLIPNDTVKAMIANWCEENKVKISDKFEHNLSPFSSSPTGHVAKNSKARSFPEVGNGPENKKEDISSLSSGERSNGCKSSETEKSGHSYIYRSGSASSAMSTIDHVLSVLNESVVKLSGEITSKSPKTSPNKESPYSSGLAEQHLQSIKTKVDIKENETCTQVRDQALLNSESGSNTSIPDSHIKKLVKDLKSQSDDLKTKAARELRLLAKDNKENRVIIGSCGAISYLISLLYSKEELTQEHSVTALLNLSIDDNIKAMIAEAGAVEPLVHVLKTGNDVAKENSAAALFSLSLLEEYKAKIGRSGAVIALVDLLASGTLRGKKDAATALFNLSIFHENKSRIVQAGAVKYLIELLDLSTGMTDKATALLANLSTVGEGRLAIGKQGGIPLLVEILESGSQRGKENAASILLQLCLNSSKFCTLVLQEGAVPPLVSLSQCGTTRAKEKAQQLLSHFRNQREAGVRKLKT 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7652318 7656554 - Conep07aG0102100.1 Cone7ag0992 441588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0992 756 Gene3D - 454 753 IPR011989 -
Cone7ag0992 756 MobiDBLite consensus disorder prediction 321 372 - -
Cone7ag0992 756 SUPERFAMILY ARM repeat 463 743 IPR016024 -
Cone7ag0992 756 FunFam RING-type E3 ubiquitin transferase 236 308 - -
Cone7ag0992 756 FunFam RING-type E3 ubiquitin transferase 456 749 - -
Cone7ag0992 756 CDD RING-Ubox_PUB 237 289 IPR045210 -
Cone7ag0992 756 PANTHER U BOX DOMAIN-CONTAINING 30 747 - -
Cone7ag0992 756 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 634 675 IPR000225 GO:0005515(InterPro)
Cone7ag0992 756 MobiDBLite consensus disorder prediction 408 429 - -
Cone7ag0992 756 MobiDBLite consensus disorder prediction 356 372 - -
Cone7ag0992 756 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone7ag0992 756 SUPERFAMILY RING/U-box 234 310 - -
Cone7ag0992 756 SMART Ubox_2 239 302 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone7ag0992 756 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 511 553 IPR000225 GO:0005515(InterPro)
Cone7ag0992 756 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 593 635 IPR000225 GO:0005515(InterPro)
Cone7ag0992 756 Pfam Armadillo/beta-catenin-like repeat 542 580 IPR000225 GO:0005515(InterPro)
Cone7ag0992 756 Pfam Armadillo/beta-catenin-like repeat 584 621 IPR000225 GO:0005515(InterPro)
Cone7ag0992 756 Pfam Armadillo/beta-catenin-like repeat 500 539 IPR000225 GO:0005515(InterPro)
Cone7ag0992 756 Pfam Armadillo/beta-catenin-like repeat 666 702 IPR000225 GO:0005515(InterPro)
Cone7ag0992 756 Coils Coil 179 211 - -
Cone7ag0992 756 Pfam U-box domain 236 307 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone7ag0992 756 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 224 317 IPR013083 -
Cone7ag0992 756 SMART arm_5 582 622 IPR000225 GO:0005515(InterPro)
Cone7ag0992 756 SMART arm_5 663 703 IPR000225 GO:0005515(InterPro)
Cone7ag0992 756 SMART arm_5 541 581 IPR000225 GO:0005515(InterPro)
Cone7ag0992 756 SMART arm_5 500 540 IPR000225 GO:0005515(InterPro)
Cone7ag0992 756 SMART arm_5 623 662 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0156 Cone-Chr12:793911 Cone7ag0992 Cone-Chr7:7652318 3.72E-95 dispersed
Cone6ag1431 Cone-Chr6:11480343 Cone7ag0992 Cone-Chr7:7652318 3.39E-104 dispersed
Cone7ag0992 Cone-Chr7:7652318 Cone8ag0150 Cone-Chr8:776871 9.45E-79 dispersed
Cone7ag0984 Cone-Chr7:7594941 Cone7ag0992 Cone-Chr7:7652318 1.41E-19 proximal
Cone4ag1137 Cone-Chr4:9801752 Cone7ag0992 Cone-Chr7:7652318 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0992 - - - 0.0