Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1000 ATGGAACCCAACTTCTTTTCTGAATTCTCACCACAATACTGTTCATCGTTTAGCTCTCGAGAATCTTTGTCGTGGGACGACGACATAGATTCCATCCCATTTAGCAGAAATGACTCATGCTGGGAAGGGAAGCTAGATTTCCTCTCTGAATTTGTAGTCAAGAAAGAAGAGGAAGTGCTCGGGTTTGTAGCCGGTTCCTGCTGGAAACAAGAAGAACAACCGGTGAAGGAAAAATCGTATAGAGGGGTAAGGAAGAGGCCATGGGGAAAATATGCAGCAGAGATAAGGGATTCAACCAGGCATGGGATTAGGGTTTGGCTTGGAACATTCGATACAGCAGAGGCAGCTGCTTTAGCATATGATCAAGCTGCATTTGCAATGAGAGGCTCTTTGGCCGTTCTTAATTTCCCGGTCGAAATCGTGAGGGAGTCTCTTATGGAAATGGAGTTCGAAGCTCGCGATGGGTGCTCGCCGGTCATGGCGCTTAAGAGTAAACACACGATGAGAAGGAAGAAGAAGGTATTAGGTAGTAAGAGTAAAGGCGTAGAAAAGAGGAAGAGTGATAATTTGATGGTGTTAGAGTTAGAGGATTTGGGTGTTGATTATTTATTTGGAGGACCTTTTGAGGGTAAGCTCATGTGA 642 44.86 MEPNFFSEFSPQYCSSFSSRESLSWDDDIDSIPFSRNDSCWEGKLDFLSEFVVKKEEEVLGFVAGSCWKQEEQPVKEKSYRGVRKRPWGKYAAEIRDSTRHGIRVWLGTFDTAEAAALAYDQAAFAMRGSLAVLNFPVEIVRESLMEMEFEARDGCSPVMALKSKHTMRRKKKVLGSKSKGVEKRKSDNLMVLELEDLGVDYLFGGPFEGKLM 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7732787 7733428 - Conep07aG0102900.1 Cone7ag1000 441596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1000 213 Gene3D AP2/ERF domain 78 139 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1000 213 FunFam Ethylene-responsive transcription factor 2 78 139 - -
Cone7ag1000 213 PANTHER DNA-BINDING DOMAIN 57 173 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cone7ag1000 213 SUPERFAMILY DNA-binding domain 79 139 IPR016177 GO:0003677(InterPro)
Cone7ag1000 213 ProSiteProfiles AP2/ERF domain profile. 79 137 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1000 213 SMART rav1_2 79 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1000 213 CDD AP2 78 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1000 213 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1000 213 PRINTS Ethylene responsive element binding protein signature 103 119 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1000 213 Pfam AP2 domain 79 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1128 Cone-Chr4:9736830 Cone7ag1000 Cone-Chr7:7732787 9.87E-107 dispersed
Cone7ag0318 Cone-Chr7:1377456 Cone7ag1000 Cone-Chr7:7732787 5.79E-27 dispersed
Cone7ag0319 Cone-Chr7:1382619 Cone7ag1000 Cone-Chr7:7732787 2.37E-50 dispersed
Cone7ag1000 Cone-Chr7:7732787 Cone9ag0983 Cone-Chr9:5033048 2.48E-29 dispersed
Cone7ag1000 Cone-Chr7:7732787 Cone7ag1001 Cone-Chr7:7739103 8.16E-23 tandem
Cone3ag0682 Cone-Chr3:3474558 Cone7ag1000 Cone-Chr7:7732787 2.98E-45 wgd
Cone4ag1127 Cone-Chr4:9730501 Cone7ag1000 Cone-Chr7:7732787 1.20E-24 wgd
Cone4ag0322 Cone-Chr4:1457242 Cone7ag1000 Cone-Chr7:7732787 1.40E-27 wgd
Cone7ag0317 Cone-Chr7:1375445 Cone7ag1000 Cone-Chr7:7732787 1.70E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46515 PF10551 MULE 3.00E-17 CL0219 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1000 K14516 - csv:101220325 186.808