Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1008 ATGACATCTAGTGGTGGTGGCGGAAGCGGCGGCTCTCCTTGTGGAGCATGCAAGTTTCTACGTCGGAAGTGTGCACCGGATTGCATTTTTGCTCCGTACTTCTGCTCGGAGCAAGGGCCTGCCCGTTTTGCAGCGATTCATAAAGTATTTGGTGCTAGTAATGTGTCCAAGTTATTGTTACATATCCCAATTGCCGATCGATGTGAAGCCGTTGTTACTATAGCTTATGAAGCTCAAGCCAGGATCAAGGATCCTGTTTACGGTTGTGTTTCTCATATATTTGCCCTCCAACAACAGGTGGCATGGCTTCAAGCTCAACTTATGCAAACCAAGGCACAACTAGCTCATCAAACCATCGTGAATTCACGTAACATGGAGAATGAATGGGTAGGAAATTACATGAGTGGAGTCCCAAGCTTTGCGTCTTATAATCCTACTCATGTCAATTCCATTTCACCTCAAAGCTCGCTTGAATCCGTCGATCATAGCATCAATAACGATCTGATGTGCACACAAGAGATACAAAGCCGAGATCACGATCGAGAACTCGGTGAATTCCAGCCTAATTACAATTCTAGGAAGAGACCGTGCAACAATGATAGCAATGGTGATGACTTAAGCGAGCTTCAAGCATTGGCTTTTAGAATGATGAGAAACTAG 660 44.85 MTSSGGGGSGGSPCGACKFLRRKCAPDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPIADRCEAVVTIAYEAQARIKDPVYGCVSHIFALQQQVAWLQAQLMQTKAQLAHQTIVNSRNMENEWVGNYMSGVPSFASYNPTHVNSISPQSSLESVDHSINNDLMCTQEIQSRDHDRELGEFQPNYNSRKRPCNNDSNGDDLSELQALAFRMMRN 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7775944 7776774 - Conep07aG0103700.1 Cone7ag1008 441604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1008 219 ProSiteProfiles LOB domain profile. 12 114 IPR004883 -
Cone7ag1008 219 PANTHER LOB DOMAIN CONTAINING PROTEIN 9 189 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cone7ag1008 219 MobiDBLite consensus disorder prediction 191 205 - -
Cone7ag1008 219 Pfam Lateral organ boundaries (LOB) domain 13 111 IPR004883 -
Cone7ag1008 219 MobiDBLite consensus disorder prediction 184 205 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1008 K13944 - - vvi:100261792 274.248
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0542 Cone-Chr3:2684662 Cone7ag1008 Cone-Chr7:7775944 1.41E-45 dispersed
Cone4ag1122 Cone-Chr4:9698498 Cone7ag1008 Cone-Chr7:7775944 3.12E-138 dispersed
Cone7ag1008 Cone-Chr7:7775944 Cone8ag1587 Cone-Chr8:11808670 2.92E-37 dispersed
Cone7ag1007 Cone-Chr7:7769199 Cone7ag1008 Cone-Chr7:7775944 4.63E-54 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone1ag0847 . 1 218 AS2 family AT1G65620 71.6 4.0e-80 295.0
Cone5ag0965 . 1 218 AS2 family AT1G65620 70.6 9.8e-79 290.4
Cone9ag1307 . 2 175 AS2 family AT1G65620 58.2 7.6e-47 184.5
Cone6ag1377 . 2 110 AS2 family AT1G65620 80.7 4.9e-46 181.8
Cone16ag0081 . 3 113 AS2 family AT1G65620 75.7 7.1e-45 177.9
Cone16ag0939 . 1 113 AS2 family AT1G65620 71.7 3.9e-43 172.2
Cone19ag0159 . 1 113 AS2 family AT1G65620 71.7 3.3e-42 169.1
Cone13ag0160 . 1 116 AS2 family AT1G65620 69.0 5.6e-42 168.3
Cone6ag1133 . 3 111 AS2 family AT1G65620 72.5 8.1e-41 164.5
Cone5ag1559 . 5 111 AS2 family AT1G65620 66.4 3.4e-39 159.1
Cone9ag1121 . 3 111 AS2 family AT1G65620 67.0 2.4e-37 152.9
Cone6ag1377 . 1 126 AS2 family AT5G66870 79.4 1.4e-52 204.1
Cone6ag1133 . 5 133 AS2 family AT5G66870 75.2 6.1e-51 198.7
Cone9ag1307 . 1 126 AS2 family AT5G66870 75.4 5.1e-50 195.7
Cone5ag1559 . 5 123 AS2 family AT5G66870 73.1 2.0e-49 193.7
Cone9ag1121 . 5 133 AS2 family AT5G66870 70.5 1.1e-47 188.0
Cone1ag0847 . 4 112 AS2 family AT5G66870 78.0 8.5e-45 178.3
Cone5ag0965 . 4 112 AS2 family AT5G66870 78.0 8.5e-45 178.3
Cone16ag0939 . 1 115 AS2 family AT5G66870 65.2 8.2e-40 161.8
Cone16ag0081 . 1 113 AS2 family AT5G66870 69.9 1.4e-39 161.0
Cone19ag0159 . 11 113 AS2 family AT5G66870 68.9 2.0e-38 157.1
Cone13ag0160 . 10 114 AS2 family AT5G66870 67.6 2.6e-38 156.8
Cone6ag1133 . 8 119 AS2 family AT2G23660 71.4 2.5e-44 176.8
Cone9ag1121 . 8 119 AS2 family AT2G23660 66.1 7.4e-41 165.2
Cone1ag0847 . 6 112 AS2 family AT2G23660 67.3 2.4e-39 160.2
Cone5ag0965 . 6 112 AS2 family AT2G23660 67.3 2.4e-39 160.2
Cone19ag0159 . 11 114 AS2 family AT2G23660 66.3 6.9e-39 158.7
Cone16ag0081 . 8 113 AS2 family AT2G23660 66.0 1.2e-38 157.9
Cone16ag0939 . 7 113 AS2 family AT2G23660 60.7 5.0e-37 152.5
Cone13ag0160 . 12 114 AS2 family AT2G23660 64.1 6.5e-37 152.1
Cone16ag0939 . 4 116 AS2 family AT3G27650 84.1 1.5e-53 206.5
Cone16ag0081 . 4 114 AS2 family AT3G27650 77.5 4.6e-47 184.9
Cone19ag0159 . 11 117 AS2 family AT3G27650 76.6 1.9e-45 179.5
Cone13ag0160 . 10 118 AS2 family AT3G27650 75.5 9.7e-45 177.2
Cone1ag0847 . 3 112 AS2 family AT3G27650 69.1 7.6e-42 167.5
Cone5ag0965 . 3 112 AS2 family AT3G27650 69.1 7.6e-42 167.5
Cone9ag1307 . 4 112 AS2 family AT3G27650 69.7 1.3e-41 166.8
Cone6ag1377 . 4 112 AS2 family AT3G27650 69.7 2.2e-41 166.0
Cone6ag1133 . 1 113 AS2 family AT3G27650 61.9 3.0e-38 155.6
Cone16ag0081 . 3 122 AS2 family AT5G63090 87.5 2.0e-57 219.5
Cone13ag0160 . 5 114 AS2 family AT5G63090 88.2 3.0e-53 205.7
Cone19ag0159 . 4 113 AS2 family AT5G63090 87.3 8.6e-53 204.1
Cone16ag0939 . 1 113 AS2 family AT5G63090 85.1 2.3e-50 196.1
Cone1ag0847 . 3 112 AS2 family AT5G63090 73.6 5.1e-45 178.3
Cone5ag0965 . 3 112 AS2 family AT5G63090 73.6 5.1e-45 178.3
Cone6ag1377 . 2 110 AS2 family AT5G63090 72.5 5.2e-42 168.3
Cone9ag1307 . 2 149 AS2 family AT5G63090 55.9 6.8e-42 167.9
Cone8ag1587 . 16 119 AS2 family AT5G63090 68.3 7.1e-39 157.9
Cone6ag1133 . 6 111 AS2 family AT5G63090 68.9 1.0e-37 154.1
Cone18ag0786 . 4 106 AS2 family AT5G63090 68.9 3.0e-37 152.5
Cone11ag0741 . 4 106 AS2 family AT5G63090 68.0 6.6e-37 151.4
Cone18ag0786 . 3 139 AS2 family AT2G30130 79.6 6.6e-56 214.5
Cone11ag0741 . 3 139 AS2 family AT2G30130 78.8 1.5e-55 213.4
Cone7ag0064 . 3 140 AS2 family AT2G30130 76.1 3.1e-53 205.7
Cone1ag1647 . 3 114 AS2 family AT2G30130 85.7 1.7e-51 199.9
Cone4ag0070 . 3 141 AS2 family AT2G30130 71.9 5.4e-50 194.9
Cone8ag1587 . 11 122 AS2 family AT2G30130 77.7 9.6e-47 184.1
Cone5ag0176 . 3 97 AS2 family AT2G30130 88.4 1.2e-44 177.2
Cone11ag1283 . 47 154 AS2 family AT2G30130 66.7 1.3e-38 157.1
Cone1ag0847 . 7 130 AS2 family AT2G30130 60.6 3.6e-38 155.6
Cone5ag0965 . 7 130 AS2 family AT2G30130 60.6 3.6e-38 155.6
Cone1ag1630 . 2 114 AS2 family AT2G30130 68.1 4.8e-38 155.2
Cone18ag0297 . 47 154 AS2 family AT2G30130 65.7 4.8e-38 155.2
Cone19ag0159 . 11 126 AS2 family AT2G30130 62.9 1.1e-37 154.1
Cone16ag0081 . 8 124 AS2 family AT2G30130 64.1 1.4e-37 153.7
Cone8ag1587 . 1 169 AS2 family AT1G31320 64.8 4.7e-53 204.9
Cone7ag0064 . 2 118 AS2 family AT1G31320 67.5 1.8e-44 176.4
Cone18ag0786 . 2 117 AS2 family AT1G31320 70.7 4.0e-44 175.3
Cone11ag0741 . 2 117 AS2 family AT1G31320 69.8 8.8e-44 174.1
Cone1ag1647 . 5 113 AS2 family AT1G31320 72.5 3.4e-43 172.2
Cone4ag0070 . 5 118 AS2 family AT1G31320 67.5 7.5e-43 171.0
Cone5ag0176 . 5 96 AS2 family AT1G31320 78.3 3.8e-39 158.7
Cone18ag0297 . 47 215 AS2 family AT1G31320 50.6 5.0e-39 158.3
Cone19ag0159 . 1 127 AS2 family AT1G31320 57.5 1.2e-37 153.7
Cone1ag1630 . 12 127 AS2 family AT1G31320 62.1 4.7e-37 151.8
Cone18ag0297 . 43 215 AS2 family AT2G28500 61.2 1.3e-53 207.2
Cone11ag1283 . 43 215 AS2 family AT2G28500 62.5 2.8e-53 206.1
Cone5ag0326 . 42 133 AS2 family AT2G28500 88.0 7.7e-43 171.4
Cone1ag1339 . 41 133 AS2 family AT2G28500 86.0 1.7e-42 170.2
Cone11ag1078 . 31 149 AS2 family AT2G28500 68.1 8.5e-42 167.9
Cone18ag0498 . 61 153 AS2 family AT2G28500 83.9 3.2e-41 166.0
Cone8ag1587 . 15 127 AS2 family AT2G28500 64.6 3.7e-37 152.5
Cone18ag0786 . 5 113 AS2 family AT2G28500 65.1 1.4e-36 150.6
Cone11ag1283 . 30 215 AS2 family AT1G07900 56.5 2.5e-47 186.0
Cone18ag0297 . 42 215 AS2 family AT1G07900 59.2 2.5e-47 186.0
Cone18ag0498 . 61 224 AS2 family AT1G07900 63.7 4.4e-44 175.3
Cone5ag0326 . 42 159 AS2 family AT1G07900 83.9 1.3e-43 173.7
Cone1ag1339 . 41 158 AS2 family AT1G07900 83.1 2.2e-43 172.9
Cone11ag1078 . 14 213 AS2 family AT1G07900 51.9 3.7e-43 172.2
Cone8ag1587 . 12 169 AS2 family AT1G16530 57.8 1.1e-43 173.7
Cone11ag0741 . 5 121 AS2 family AT1G16530 65.3 3.7e-39 158.7
Cone18ag0786 . 5 119 AS2 family AT1G16530 65.5 1.1e-38 157.1
Cone4ag0070 . 5 128 AS2 family AT1G16530 61.9 1.4e-38 156.8
Cone7ag0064 . 5 127 AS2 family AT1G16530 61.1 1.2e-37 153.7
Cone5ag0152 . 8 156 AS2 family AT2G30340 68.6 3.9e-54 209.1
Cone1ag1630 . 4 124 AS2 family AT2G30340 78.7 1.4e-51 200.7
Cone1ag1630 . 1 131 AS2 family AT2G40470 87.8 1.6e-60 229.9
Cone5ag0152 . 30 161 AS2 family AT2G40470 87.9 2.7e-60 229.2
Cone8ag1587 . 15 124 AS2 family AT2G40470 64.5 8.9e-40 161.0
Cone7ag0064 . 5 167 AS2 family AT2G40470 51.5 5.4e-37 151.8
Cone1ag0847 . 8 140 AS2 family AT2G40470 56.7 1.6e-36 150.2
Cone5ag0965 . 8 140 AS2 family AT2G40470 56.7 1.6e-36 150.2
Cone18ag0386 . 4 136 AS2 family AT3G11090 66.2 1.5e-45 179.9
Cone11ag1202 . 4 151 AS2 family AT3G11090 63.8 2.0e-45 179.5
Cone7ag1007 . 1 124 AS2 family AT2G42440 76.6 1.8e-50 196.8
Cone4ag1122 . 9 128 AS2 family AT2G42440 63.6 3.5e-38 156.0
Cone7ag1008 . 11 127 AS2 family AT2G42440 64.4 1.3e-37 154.1
Cone7ag1007 . 4 137 AS2 family AT3G58190 76.1 5.4e-54 208.4
Cone7ag1008 . 1 127 AS2 family AT3G58190 69.5 5.6e-43 171.8
Cone4ag1122 . 9 120 AS2 family AT3G58190 71.4 6.1e-42 168.3
Cone7ag1007 . 1 110 AS2 family AT2G31310 61.8 1.0e-37 154.1
Cone7ag1008 . 1 219 AS2 family AT2G42430 54.6 3.8e-56 215.7
Cone4ag1122 . 1 221 AS2 family AT2G42430 52.8 1.3e-53 207.2
Cone7ag1007 . 3 109 AS2 family AT2G42430 73.8 4.5e-41 165.6
Cone3ag0542 . 4 126 AS2 family AT2G42430 61.8 7.9e-38 154.8
Cone7ag1008 . 13 115 AS2 family AT2G45420 76.7 3.7e-41 166.0
Cone4ag1122 . 14 116 AS2 family AT2G45420 76.7 6.2e-41 165.2
Cone7ag1007 . 7 109 AS2 family AT2G45420 70.9 6.9e-40 161.8
Cone3ag0542 . 5 106 AS2 family AT2G45420 75.5 9.0e-40 161.4
Cone3ag0542 . 5 118 AS2 family AT3G03760 87.7 9.0e-51 198.0
Cone4ag1122 . 8 120 AS2 family AT3G03760 69.9 3.0e-38 156.4
Cone7ag1007 . 2 111 AS2 family AT3G03760 67.3 1.1e-37 154.5
Cone7ag1008 . 12 126 AS2 family AT3G03760 67.8 1.5e-37 154.1
Cone7ag1007 . 2 107 AS2 family AT4G00210 65.1 6.0e-37 151.8
Cone4ag1122 . 2 116 AS2 family AT4G00210 61.7 1.3e-36 150.6
Cone7ag1008 . 4 115 AS2 family AT2G45410 64.3 4.7e-38 155.2
Cone4ag1122 . 7 116 AS2 family AT2G45410 63.6 3.1e-37 152.5
Cone17ag0097 . 36 145 AS2 family AT3G13850 70.9 3.7e-41 166.0
Cone20ag1310 . 33 137 AS2 family AT3G13850 73.3 4.1e-40 162.5
Cone19ag0280 . 1 160 AS2 family AT1G68510 61.8 2.6e-54 209.5
Cone13ag0286 . 1 163 AS2 family AT1G68510 59.5 4.4e-54 208.8
Cone19ag0834 . 1 139 AS2 family AT1G68510 62.2 8.0e-48 188.0
Cone13ag0829 . 1 156 AS2 family AT1G68510 56.9 1.7e-45 180.3
Cone6ag1448 . 1 116 AS2 family AT1G68510 59.3 6.8e-39 158.3
Cone11ag0317 . 1 268 AS2 family AT1G67100 52.6 8.2e-69 257.7
Cone19ag0280 . 1 137 AS2 family AT1G67100 75.5 2.4e-60 229.6
Cone13ag0286 . 1 137 AS2 family AT1G67100 73.4 3.5e-59 225.7
Cone19ag0834 . 1 136 AS2 family AT1G67100 62.6 2.0e-46 183.3
Cone13ag0829 . 1 136 AS2 family AT1G67100 59.7 3.1e-44 176.0
Cone6ag1448 . 1 110 AS2 family AT1G67100 68.2 7.0e-44 174.9
Cone9ag1373 . 1 101 AS2 family AT1G67100 60.9 4.9e-37 152.1
Cone11ag0317 . 1 268 AS2 family AT3G02550 57.4 2.5e-74 276.2
Cone19ag0280 . 1 137 AS2 family AT3G02550 75.9 5.1e-59 225.3
Cone13ag0286 . 1 138 AS2 family AT3G02550 73.2 2.1e-57 219.9
Cone19ag0834 . 1 139 AS2 family AT3G02550 59.2 6.1e-44 175.3
Cone13ag0829 . 1 139 AS2 family AT3G02550 61.2 7.9e-44 174.9
Cone6ag1448 . 1 118 AS2 family AT3G02550 61.9 5.3e-40 162.2
Cone6ag1448 . 1 237 AS2 family AT5G67420 59.5 9.7e-68 254.2
Cone9ag1373 . 1 228 AS2 family AT5G67420 56.2 4.4e-60 228.8
Cone13ag0286 . 3 112 AS2 family AT5G67420 68.2 3.4e-44 176.0
Cone19ag0280 . 3 112 AS2 family AT5G67420 66.4 4.9e-43 172.2
Cone19ag0834 . 3 106 AS2 family AT5G67420 59.6 3.6e-38 156.0
Cone6ag1448 . 1 236 AS2 family AT3G49940 60.1 1.6e-67 253.4
Cone9ag1373 . 1 227 AS2 family AT3G49940 58.1 3.5e-62 235.7
Cone19ag0280 . 3 112 AS2 family AT3G49940 68.2 2.2e-43 173.3
Cone13ag0286 . 3 112 AS2 family AT3G49940 67.3 4.8e-43 172.2
Cone11ag0317 . 3 112 AS2 family AT3G49940 67.3 1.1e-42 171.0
Cone19ag0834 . 3 106 AS2 family AT3G49940 60.6 5.2e-37 152.1
Cone6ag1448 . 1 237 AS2 family AT4G37540 57.1 4.3e-65 245.4
Cone9ag1373 . 1 228 AS2 family AT4G37540 55.3 2.3e-58 223.0
Cone13ag0286 . 3 113 AS2 family AT4G37540 64.9 6.8e-42 168.3
Cone19ag0280 . 3 113 AS2 family AT4G37540 65.8 2.0e-41 166.8
Cone19ag0834 . 3 115 AS2 family AT4G37540 57.5 1.5e-36 150.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005661 1 2 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46518 PF00069 Pkinase 2.50E-17 CL0016 Cone TF