Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1018 ATGGAAGAGTTAGAAGAAGCTAACAGAGGGGCTGTGCAAAGCTTCCATAGAGTTCTAATCCTATTAACTCAGCCTCAGGATCAAGTTCAGCGTAGGAATTTAATGGCAGAAACAGGGGAAACTGTTTTTAGATTCAGAAAACTGATTTCTCTTCTAAACACTGGTTTGGGTCATGCAAGAGCCAGAAAGCTCAAGAAACTCCAAGTCCCTTTTCCTCAAAGCATTCTCTTAGACAACCCGAATTGCAAAACCGAGCCTCAAACCCCAGACAATAACCTTCAACTTTTCTTGGGTAAAAACCCATCTTTAGAATTAGTCTCAAATGGTAAGAACCCTCTCCAATTTTCTGAACAAAAACAAGCCCCTTCTCCTCACTATCACTTTCTTCAACAACAACAACAACAACAACGACGAAGGTTGTTTCTTCAGCATCAGCGTATGAAACAACAACAACAAGCCGAAATGCTGCTAAGTAGGAGTAATAATGGTGTTATAAGTCTGACTTTTGATAGCTCTAGTTGCACCCCTACAATGTCATCTACTACTGGATCATTTATCTCTTCGTTGAGCATGGATGGGAGCGTGGCTAATTTGGCTGCTGGCAGTGCATTTCATTTGCTTGGGGCAGCATCTCATTCTTCAGATCATGTTTCGCAGCATAAGAGAAAGTTCTTAGGGAGAGAAATTGAAGGGAGTGTTAAATGTGGAGGTAGTGGTAAATGCCATTGTTCAAAAAAGAGAAAGCATAGAGTGAAAAGATTGATCAAAGTACCGGCCATAAGTAACAAGCTCGCAGACATTCCCCCAGATGATTATTCATGGAGAAAATATGGGCAGAAGCCGATAAAGGGTTCTCCCCATCCTAGGGGATACTACAAGTGCAGTAGCATGAGAGGTTGCCCGGCAAGGAAGCATGTGGAGAGGTGCTTAGATGAGCCATCAATGCTTATCGTAACCTATGAAGGCGAGCACAACCACCCAAGGGTACCTTCTCAATCCGCAAACACATAG 1011 42.83 MEELEEANRGAVQSFHRVLILLTQPQDQVQRRNLMAETGETVFRFRKLISLLNTGLGHARARKLKKLQVPFPQSILLDNPNCKTEPQTPDNNLQLFLGKNPSLELVSNGKNPLQFSEQKQAPSPHYHFLQQQQQQQRRRLFLQHQRMKQQQQAEMLLSRSNNGVISLTFDSSSCTPTMSSTTGSFISSLSMDGSVANLAAGSAFHLLGAASHSSDHVSQHKRKFLGREIEGSVKCGGSGKCHCSKKRKHRVKRLIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLDEPSMLIVTYEGEHNHPRVPSQSANT 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7867537 7869683 - Conep07aG0104700.1 Cone7ag1018 441614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1018 336 SMART WRKY_cls 268 328 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone7ag1018 336 SUPERFAMILY WRKY DNA-binding domain 266 328 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone7ag1018 336 ProSiteProfiles WRKY domain profile. 263 329 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone7ag1018 336 Pfam Plant zinc cluster domain 229 266 IPR018872 -
Cone7ag1018 336 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 332 IPR044810 GO:0003700(InterPro)
Cone7ag1018 336 FunFam WRKY transcription factor 65 252 329 - -
Cone7ag1018 336 Gene3D WRKY domain 253 330 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone7ag1018 336 Pfam WRKY DNA -binding domain 270 327 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1018 Cone-Chr7:7867537 Cone9ag1341 Cone-Chr9:10068119 4.70E-55 dispersed
Cone17ag0272 Cone-Chr17:1288799 Cone7ag1018 Cone-Chr7:7867537 9.87E-17 wgd
Cone17ag0596 Cone-Chr17:3167378 Cone7ag1018 Cone-Chr7:7867537 3.56E-117 wgd
Cone20ag0815 Cone-Chr20:5790000 Cone7ag1018 Cone-Chr7:7867537 1.43E-121 wgd
Cone20ag1141 Cone-Chr20:7768393 Cone7ag1018 Cone-Chr7:7867537 2.93E-16 wgd
Cone4ag1113 Cone-Chr4:9616935 Cone7ag1018 Cone-Chr7:7867537 6.90E-184 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46520 PF02383 Syja_N 2.20E-80 CL0031 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1018 - - - 0.0