Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1043 ATGGCCTCCAAAACGGAACAAGACAGCCTCGTATTCCGATCAAAGCTTCCCGACATCTACATCCCGAAACACCTCCCTCTGCATTCATATTGCTTCGAGAACATGTCGAAGATCGGGTCCCGCCCGTGCCTGATAAACGGTTCGACTGGCGACATATACACATACTACGACGTGGACCTAACAGCTCGTAAAGTCGGTTCGGGCCTGAACAAGCTCGGCATTGGCCCAGGCGACGTGATCATACTCTTACTACCCAATACGCCCGAATTCGTCTTCTCTTTCCTCGGAGCGTCATATGTCGGGGCCATCATGACGGCGGCCAACCCATTATTCACGGAAGCGGAGGTGGCAAAGCAAGCAAAAGCATCCAAGGCCAAACTCATAATAACTCAAGCATGCCATTATGACAAAGTAAAAGCCTTAGCACAAAATGATCACGACCAAAAGGTTATGATCATGTCTATAGACACAGCCCCACATGAAGACTGTTTACATTTCTCCGTGCTAACTTCAGCCAATGCGGAGGAGATTCCACAAGTCAAAATGGACCCAGACGACGTCGTGGCACTACCTTATTCGTCAGGCACGACGGGGCTACCAAAAGGAGTCGTGCTAACGCACAAAGGGCTTGTGACAAGTGTCGCACAACAAGTGGACGGGGAAAATCCGAACTTGTACTATCACAGCGAAGATGTGATTCTATGCGTGTTGCCACTTTTCCATATCTACTCACTCAACTCGGTGCTGCTCTGTGGGTTGAGATCAGGTGCGGTGATTCTATTGATGCAGAAGTTTGACATCGGTTCCTTGTTGGCGTTGATCGATAGTTACAAGGTTTCCATCGCTCCAATCGTTCCTCCGATCGTATTGGAGATCTCGAAATCACCTGATCTTGACAAGCATGATCTGAGTTCTATACGTGTGATTAAATGTGGAGGAGCTCCCCTTGGTAAGGAGCTAGAGGATTCTGTGAGAGCTAAGTTCCCTAACGCTGTTCTTGGTCAGGGATATGGAATGACAGAGGCAGGTCCAGTATTGACAATGGGATTAGCATTTGCTAAGCAACCATTTCCAGTGAAGCCGGGGGCCTGCGGCACCGTCATTAGAAATTCCGAGATGAAGATCGCCGACACGGAAACTGGTGCCTCTCTACCTCGCAATATGCCTGGTGAAATTTGCATTAGAGGAGACCAGATCATGAAAGGTTATTTGAACAATCCCGAGGCCACAACGAATACCATAGACAAAGACGGGTGGCTACATACAGGCGACATCGGGTTTATTGATGACGACGATGAGCTCTTTATTGTTGATAGATTGAAGGAACTGATCAAATATAAAGGCTTTCAAGTAGCTCCAGCTGAGCTCGAAGCCCTTCTTCTCACACACCCTAACATATCTGATGCTGCTGTTGTTCCCATGAAAGATGAAAACGCTGGAGAGATTCCTGTTGCGTTTGTAGTCACTTCCACCCGTTCTACCGTAACTGAGGATGACGTGAAACAGTTTGTATCCAAACAGGTGGTTTTCTATAAAAGAATAAACCGAGTGTTTTTCATCAATGCGATTCCCAGGTCACCATCAGGCAAGATCTTGAGGAAGGAGCTAAGAGCGAAACTAGCTGCTGGATTTCCAAACTAA 1641 47.53 MASKTEQDSLVFRSKLPDIYIPKHLPLHSYCFENMSKIGSRPCLINGSTGDIYTYYDVDLTARKVGSGLNKLGIGPGDVIILLLPNTPEFVFSFLGASYVGAIMTAANPLFTEAEVAKQAKASKAKLIITQACHYDKVKALAQNDHDQKVMIMSIDTAPHEDCLHFSVLTSANAEEIPQVKMDPDDVVALPYSSGTTGLPKGVVLTHKGLVTSVAQQVDGENPNLYYHSEDVILCVLPLFHIYSLNSVLLCGLRSGAVILLMQKFDIGSLLALIDSYKVSIAPIVPPIVLEISKSPDLDKHDLSSIRVIKCGGAPLGKELEDSVRAKFPNAVLGQGYGMTEAGPVLTMGLAFAKQPFPVKPGACGTVIRNSEMKIADTETGASLPRNMPGEICIRGDQIMKGYLNNPEATTNTIDKDGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPNISDAAVVPMKDENAGEIPVAFVVTSTRSTVTEDDVKQFVSKQVVFYKRINRVFFINAIPRSPSGKILRKELRAKLAAGFPN 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8019733 8023049 + Conep07aG0107600.1 Cone7ag1043 441639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1043 546 FunFam 4-coumarate--CoA ligase 2 442 543 - -
Cone7ag1043 546 Pfam AMP-binding enzyme 37 404 IPR000873 -
Cone7ag1043 546 Gene3D - 441 542 IPR045851 -
Cone7ag1043 546 SUPERFAMILY Acetyl-CoA synthetase-like 7 541 - -
Cone7ag1043 546 CDD 4CL 21 536 - -
Cone7ag1043 546 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 441 - -
Cone7ag1043 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 537 - GO:0016405(PANTHER)
Cone7ag1043 546 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Cone7ag1043 546 Gene3D - 2 440 IPR042099 -
Cone7ag1043 546 Pfam AMP-binding enzyme C-terminal domain 455 530 IPR025110 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0303 Cone-Chr1:2270170 Cone7ag1043 Cone-Chr7:8019733 4.39E-36 dispersed
Cone5ag0595 Cone-Chr5:2547552 Cone7ag1043 Cone-Chr7:8019733 1.95E-240 dispersed
Cone6ag0760 Cone-Chr6:3879508 Cone7ag1043 Cone-Chr7:8019733 1.25E-54 dispersed
Cone7ag1043 Cone-Chr7:8019733 Cone8ag0512 Cone-Chr8:3651093 1.71E-105 dispersed
Cone3ag0722 Cone-Chr3:3690259 Cone7ag1043 Cone-Chr7:8019733 1.52E-119 wgd
Cone4ag1085 Cone-Chr4:9393443 Cone7ag1043 Cone-Chr7:8019733 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1043 K01904 - mdm:103427406 860.136