Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1075 ATGGCAAACAGGCTGAGTTTATTAACATCATGTCTCATGATCTCAACAATGTGGATGGCCACAGATGGTAGAATCCCCGGCGTATACAGCGGCGGCCAATGGCAAACAGCTCACGCCACCTTCTACGGCGGCTCTGACGCCTCTGGCACTATGGGCGGAGCTTGCGGGTACGGTAACTTGTACAGCCAGGGGTACGGCGTGAACACGGCGGCACTAAGCACGGCTCTGTTCAACAGCGGGCTGAGCTGCGGTGCTTGCTTTGAGATCAAGTGCGCAAACGACCGAAGATGGTGCCATTCCGGCAGCCCTTCCATCTTAATCACCGCTACCAACTTCTGCCCGCCTAACTTCGCTCTGCCCAACGACAATGGTGGCTGGTGCAACCCCCCTCGCCCCCATTTCGACCTTGCCATGCCCATGTTCCTTCAGATCGCCGAGTACCGCGCCGGAATAGTTCCAATCTCCTACCGCCGAGTGGCATGCCGAAAGCGCGGAGGGATAAGGTTCACGATAAACGGGCACATGTACTTCAACTTGGTTTTAATCTCCAACGTGGCGGGTGCAGGGGATATCGTGAGGGCGAGCGTGAAAGGATCAAAGACAGGGTGGATAAGCATGAGCCGGAACTGGGGTCAAAACTGGCAGTCGAACGCTGTTTTGGTGGGCCAGACCTTGTCTTTTAGAGTTACGGGCAGTGACAGACGTACCTCTACGTCATGGAACATCGTCCCCGCCAACTGGCAGTTCGGTCAAACATTCACCGGCAAAAATTTCAGAGTTTGA 783 55.3 MANRLSLLTSCLMISTMWMATDGRIPGVYSGGQWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDRRWCHSGSPSILITATNFCPPNFALPNDNGGWCNPPRPHFDLAMPMFLQIAEYRAGIVPISYRRVACRKRGGIRFTINGHMYFNLVLISNVAGAGDIVRASVKGSKTGWISMSRNWGQNWQSNAVLVGQTLSFRVTGSDRRTSTSWNIVPANWQFGQTFTGKNFRV 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8181630 8182871 - Conep07aG0110900.1 Cone7ag1075 441671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1075 260 Pfam Lytic transglycolase 69 156 IPR009009 -
Cone7ag1075 260 SUPERFAMILY PHL pollen allergen 163 255 IPR036749 -
Cone7ag1075 260 SMART dpbb_1 69 156 IPR007112 -
Cone7ag1075 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664(InterPro)
Cone7ag1075 260 PRINTS Expansin signature 64 78 IPR002963 GO:0009664(InterPro)
Cone7ag1075 260 PRINTS Expansin signature 141 154 IPR002963 GO:0009664(InterPro)
Cone7ag1075 260 PRINTS Expansin signature 177 198 IPR002963 GO:0009664(InterPro)
Cone7ag1075 260 PRINTS Expansin signature 212 233 IPR002963 GO:0009664(InterPro)
Cone7ag1075 260 PRINTS Expansin signature 105 115 IPR002963 GO:0009664(InterPro)
Cone7ag1075 260 PRINTS Expansin signature 165 177 IPR002963 GO:0009664(InterPro)
Cone7ag1075 260 PRINTS Expansin signature 124 141 IPR002963 GO:0009664(InterPro)
Cone7ag1075 260 PRINTS Expansin signature 91 102 IPR002963 GO:0009664(InterPro)
Cone7ag1075 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 255 IPR007117 -
Cone7ag1075 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 166 IPR007112 -
Cone7ag1075 260 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576(InterPro)
Cone7ag1075 260 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576(InterPro)
Cone7ag1075 260 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576(InterPro)
Cone7ag1075 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576(InterPro)
Cone7ag1075 260 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576(InterPro)
Cone7ag1075 260 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576(InterPro)
Cone7ag1075 260 PANTHER EXPANSIN-A15 16 258 IPR002963 GO:0009664(InterPro)
Cone7ag1075 260 Gene3D - 22 162 IPR036908 -
Cone7ag1075 260 SUPERFAMILY Barwin-like endoglucanases 33 184 IPR036908 -
Cone7ag1075 260 CDD DPBB_EXPA_N 33 161 - -
Cone7ag1075 260 Pfam Expansin C-terminal domain 167 244 IPR007117 -
Cone7ag1075 260 Gene3D - 166 258 IPR036749 -
Cone7ag1075 260 FunFam Expansin 23 162 - -
Cone7ag1075 260 FunFam Expansin 166 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0314 Cone-Chr10:1493173 Cone7ag1075 Cone-Chr7:8181630 3.09E-155 dispersed
Cone6ag0576 Cone-Chr6:2820883 Cone7ag1075 Cone-Chr7:8181630 6.45E-127 dispersed
Cone6ag0734 Cone-Chr6:3709224 Cone7ag1075 Cone-Chr7:8181630 1.71E-92 dispersed
Cone7ag0505 Cone-Chr7:2331133 Cone7ag1075 Cone-Chr7:8181630 5.53E-115 dispersed
Cone7ag1075 Cone-Chr7:8181630 Cone9ag0581 Cone-Chr9:2741577 2.13E-130 dispersed
Cone1ag0635 Cone-Chr1:6129085 Cone7ag1075 Cone-Chr7:8181630 1.31E-170 wgd
Cone1ag1273 Cone-Chr1:56207894 Cone7ag1075 Cone-Chr7:8181630 8.14E-153 wgd
Cone11ag1137 Cone-Chr11:8754627 Cone7ag1075 Cone-Chr7:8181630 2.00E-167 wgd
Cone18ag0444 Cone-Chr18:2169890 Cone7ag1075 Cone-Chr7:8181630 7.56E-168 wgd
Cone3ag0344 Cone-Chr3:1750135 Cone7ag1075 Cone-Chr7:8181630 4.96E-145 wgd
Cone4ag1056 Cone-Chr4:9198068 Cone7ag1075 Cone-Chr7:8181630 1.58E-187 wgd
Cone5ag1140 Cone-Chr5:5119294 Cone7ag1075 Cone-Chr7:8181630 1.86E-170 wgd
Cone5ag0260 Cone-Chr5:1106128 Cone7ag1075 Cone-Chr7:8181630 1.10E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1075 - - - 0.0