Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1079 ATGGATCCAAATCTTACAAATGGTTCTGCCATGAACGAGATTAAGGTTACCGGCTGTGACTGTTCCTCGGATGACGACAAGTTCTATGAAGCTATTTTCAGGTTCACAGATCAAATACTGATGGAAGAGAACATTGAGCAGCAGCCCTATTTGTTTTTCGATCCTTTGGGCATTAAACCTACAGAGGAATCCTTTTATAATGTTATTGGTCAAAGTCACCCTTCTTCACCTAACTTTCTTGCTTCTGCTAGTTGTAGGGGTCAAGTTAATGGCTCTAGCACTAGAAGTAGAGGCTCAATCGATCTTCGGTGGAGATATGGACTTCCAATATTATCGGAACCTGCTGTGTCCCACCATCCAAACAGCCTGACTACTAATACTGAGCTTTCAAGTCCAATTCTTTTCAGCAACAGCAACGATTCTGCATTGCAGTTCAGGGAAGTGTCAAATGAGGCCAGTAAATTGTTTCCCGTGGATAATCATCAGCTGGTTAGAGAGGCACCAAAGAATTTTGAAAATGGTAAGAGGAAGAACTCATTGACTGGGGATTTAGAGTTAGATTCAGAAGAGGGTAGGAGTTACAAGCAATTGGCTACTTATGTTGAAGAAAGTGGATTATCCGATATGTTTGATAGGGTGTTACTGGATAACGAGGGGGAAGAATCTATGGAAAAATTGAACCAAATTGGAGAGCGACAGGTGTTTAATGTAGGGAAAGATGGTGCTGCAAAGAAACATAGGAAGAAGAAAAAGAAGAATGAGAAGGAAACTGTGGATTTAAGGACCCTTTTGACTCGATGTGCACAAGCTGTGTCTTCTAATGATTATAGGACGGCTAATGAACAATTAAATCTGATTCGGAAAAATTCTTCCCCTTTTGGTGATGGGTCCCAAAGGGTGGCCCATTTCTTCGCTAACGCCCTTGAGGCCCGCTTATCTGGCACGGGGACTAGAACTGAAATCTTTTTCACCTCGATAGCTTCCAAGAAGACCACAGCGTCCGACATGTTGATGGCTTACCATGTTCATATTTTGTCTTGCCCTTTTAAGAAAATATCCTATTTATTTGCCAACGATATGATCTTGCAAGTAGCTATTCAAGCAAAAACCCTTCATATAATAGATTTTGGAATCAATTATGGATATCAATGGCCAATACTTATACAACAATTATCGTCACTACCCGGTGGGCCCCACAAGCTACGAATCACCGGAATAGAGTATCCTCACTCGGGGTTCCGTCCTGCAGCCCAGATAGAAGAAAATGGACGTCGTTTATCCATTTATTGTGAGCGTTTCAATGTCCGTTTTCAATACCAGGTTATAGCATCAAGGAATTGGGAAACTATCCGGATAGAGGACCTCAAGCTTGATAGCAAAGATGTCCTTGCTGTGAATTGCTTTCTTCGATTTAAGAACTTGCTTGATGAGACAGCTGACGTTAATTGTCCCAGAGACTTTGTCTTGGGTTTGATAAGGAAGATGAATCCAGATATCTTTGTCCATTCGATTGTAAATGGATCGTATAATGCCCCGTTTTTCATCACGAGGTTCAAAGAAGCACTATTCCATTTCTCAGCATTGTATGATGCATGGGATGCTACTTTGTCGCGTGAAAATGAAGGGAGGTTGAAGTATGAGAGGGAATTTTATGGGCGAGAAATAATGAATGTTATAGCCTGTGAGGGGTTGGAAAGGGTGGAGAGGCCGGAAACATATAAGCGATGGCAGGTTCGGGGTTTTAGAGCTGGTTTCAAGCAACTACCTCTGAAACAAGAGGTTATGGACAAGTACAGGAATAAAACAAAAGCATGGTATCATAAAGACTTTGTGCTTGATCAAGATGGCCAGTGGATGCTGCAAGGATGGAAGGGTAGGATTGTCTATGCTTCTTGTTGTTGGGTTCCAGAGCATAGTAAGTAA 1923 41.86 MDPNLTNGSAMNEIKVTGCDCSSDDDKFYEAIFRFTDQILMEENIEQQPYLFFDPLGIKPTEESFYNVIGQSHPSSPNFLASASCRGQVNGSSTRSRGSIDLRWRYGLPILSEPAVSHHPNSLTTNTELSSPILFSNSNDSALQFREVSNEASKLFPVDNHQLVREAPKNFENGKRKNSLTGDLELDSEEGRSYKQLATYVEESGLSDMFDRVLLDNEGEESMEKLNQIGERQVFNVGKDGAAKKHRKKKKKNEKETVDLRTLLTRCAQAVSSNDYRTANEQLNLIRKNSSPFGDGSQRVAHFFANALEARLSGTGTRTEIFFTSIASKKTTASDMLMAYHVHILSCPFKKISYLFANDMILQVAIQAKTLHIIDFGINYGYQWPILIQQLSSLPGGPHKLRITGIEYPHSGFRPAAQIEENGRRLSIYCERFNVRFQYQVIASRNWETIRIEDLKLDSKDVLAVNCFLRFKNLLDETADVNCPRDFVLGLIRKMNPDIFVHSIVNGSYNAPFFITRFKEALFHFSALYDAWDATLSRENEGRLKYEREFYGREIMNVIACEGLERVERPETYKRWQVRGFRAGFKQLPLKQEVMDKYRNKTKAWYHKDFVLDQDGQWMLQGWKGRIVYASCCWVPEHSK 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8200464 8202660 + Conep07aG0111300.1 Cone7ag1079 441675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1079 640 ProSiteProfiles GRAS family profile. 251 635 IPR005202 -
Cone7ag1079 640 Pfam GRAS domain family 260 634 IPR005202 -
Cone7ag1079 640 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 247 634 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1135 Cone-Chr5:5091380 Cone7ag1079 Cone-Chr7:8200464 1.33E-174 dispersed
Cone7ag1079 Cone-Chr7:8200464 Cone9ag0110 Cone-Chr9:478390 9.84E-55 dispersed
Cone7ag1079 Cone-Chr7:8200464 Cone7ag1080 Cone-Chr7:8204358 1.14E-167 tandem
Cone1ag0629 Cone-Chr1:6095291 Cone7ag1079 Cone-Chr7:8200464 2.30E-156 wgd
Cone1ag1271 Cone-Chr1:56198858 Cone7ag1079 Cone-Chr7:8200464 1.99E-165 wgd
Cone3ag0347 Cone-Chr3:1765685 Cone7ag1079 Cone-Chr7:8200464 4.48E-54 wgd
Cone4ag1048 Cone-Chr4:9129371 Cone7ag1079 Cone-Chr7:8200464 3.63E-151 wgd
Cone5ag1134 Cone-Chr5:5088153 Cone7ag1079 Cone-Chr7:8200464 6.37E-213 wgd
Cone5ag0258 Cone-Chr5:1097559 Cone7ag1079 Cone-Chr7:8200464 1.41E-168 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46525 PF16528 Exo84_C 1.30E-19 CL0295 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1079 K27753 - mdm:139189231 661.759