Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1137 ATGATGCTTGGAGAGCATCACCGTCCTAATCCAACGATCCACGTACCACCATGGACACAACTCGACACTGACGATCTGACAGCGGAGATGTTTTACTCGAGCGGTGCCTTCAATGCAAACGGCAGTAGCGCGTACTCTCCTGTCTCTCCCACTTATCATCATCATCTCCACGAATCACCGACGGCGCTGCAACGTTATTTACAGTCGAATGATTCTGACCCGGACTCTGACCCGGAGCTATCGGGTCGAGAAGCGGACGCGCCGATCGACGCTTACTCATGCGATCATTTCCGTATGTACGAGTTCAAAGTGAGGAAGTGCGCACGTGGGAGGTCACACGACTGGACCGAGTGCCCGTATGCACATCCGGGTGAAAAAGCCCGTCGCCGTGATCCAAGGAAGTACCACTATTCGGGCAGTTCCTGCCCGGAATTCCGTAAGGGCAACTGCGTGAAGGGCGATGCTTGCGAATTGGCTCATGGCGTGTTCGAGTCATGGCTACACCCGGCTCGATACCGGACTCAGCCATGTAAGGATGGAACAAGTTGTCGTCGTAGGGTTTGTTTCTTCGCCCACACGCCCGATCAGCTCCGCATCTTGCCCCATTCTTATGACGGCTCTGGTTCGGGTCTGAAGCCGTTTTTAGCGTCATCTCTTTCGGTGTCACCGCCTATGAGCCCGTTAATCGAGTCTCCGCCCATGTCTCCATTGGGCCGGTTAAGTTTCGGATCGAGTACGGGTATGGGTACAGGTTCGATATCTGAAATGGTGGCGTCGCTGAGGAACATACAGCTTGGGAAGGTGAAGTCTTTACCGAGTTCTCGAAATGTTCAATTTGGCGGGTCTTCACCCGTATTCGGAACATCTCCAAGGGGGTCCTTGCTCCGACCCGGATTCTACAGCGTCCCCACCACGCCTACTCAGGGTCCTAGCCGTAATGGATTTGGGTATTCGGATATGTGGGACCCGAGTATTGAAGAGGAGCCCGAAATGGAGCTGGTCGAGTCCGGGAGGGATCTTCGAGAGAAAATGCTCGAGAAAATCAAGATGGAAAGTTCAATGATGTGTCCGGATCCTTCAGTGGGGGCTCCGGATGTTGGCTGGGTATCAGAGCTCCTGCAGTGA 1125 54.13 MMLGEHHRPNPTIHVPPWTQLDTDDLTAEMFYSSGAFNANGSSAYSPVSPTYHHHLHESPTALQRYLQSNDSDPDSDPELSGREADAPIDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGSSCPEFRKGNCVKGDACELAHGVFESWLHPARYRTQPCKDGTSCRRRVCFFAHTPDQLRILPHSYDGSGSGLKPFLASSLSVSPPMSPLIESPPMSPLGRLSFGSSTGMGTGSISEMVASLRNIQLGKVKSLPSSRNVQFGGSSPVFGTSPRGSLLRPGFYSVPTTPTQGPSRNGFGYSDMWDPSIEEEPEMELVESGRDLREKMLEKIKMESSMMCPDPSVGAPDVGWVSELLQ 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8577193 8579641 + Conep07aG0117300.1 Cone7ag1137 441733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1137 374 SMART c3hfinal6 171 194 IPR000571 GO:0046872(InterPro)
Cone7ag1137 374 SMART c3hfinal6 136 162 IPR000571 GO:0046872(InterPro)
Cone7ag1137 374 FunFam Zinc finger CCCH domain-containing protein 66 94 162 - -
Cone7ag1137 374 Gene3D - 135 199 - -
Cone7ag1137 374 ProSiteProfiles Zinc finger C3H1-type profile. 137 163 IPR000571 GO:0046872(InterPro)
Cone7ag1137 374 PANTHER UNKEMPT FAMILY MEMBER 24 373 IPR045234 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1644 Cone-Chr4:12410916 Cone7ag1137 Cone-Chr7:8577193 3.47E-108 dispersed
Cone7ag1137 Cone-Chr7:8577193 Cone7ag1305 Cone-Chr7:9597418 3.20E-103 dispersed
Cone1ag0567 Cone-Chr1:5761316 Cone7ag1137 Cone-Chr7:8577193 2.44E-54 wgd
Cone4ag1010 Cone-Chr4:8792079 Cone7ag1137 Cone-Chr7:8577193 7.95E-250 wgd
Cone5ag1074 Cone-Chr5:4765337 Cone7ag1137 Cone-Chr7:8577193 6.91E-55 wgd
Cone7ag0724 Cone-Chr7:4337825 Cone7ag1137 Cone-Chr7:8577193 1.35E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46531 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1137 - - - 0.0