Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1160 ATGAAGATCGAGGAATTGGACGGTCCTGCTTCTGATCGTGACGAGTTTGTAGATGTCAGGAAGAATCTTCAGATTGTGAAGGTTGATGCTAAGAGAGCTTTAGTCGGGGCGGGCGCTCGGATCCTGTTTTACCCGACCCTTTTGTATAATGTGCTTCGTAACAAGATGGAGCCTGAGTTTAGATGGTGGGATGAAGTCGATCAGTTTCTTCTGCTTGGTGCTGTGCCGTTTCCTAAAGACGTTCCTCGATTGAAGCAGCTAGGTGTTGGTGGAGTTATCACTCTCAATGAATCTTATGAAACACTTGTTCCTTCTTCATTATATCAGGAATATGGTATTGATCACTTGACAATTCCCACAAGGGATTATTGTTTTGCTCCTAAATCTGCTGATATAAGCCGAGCTGTAGACTTTATTCACAAAAATGCATCTTGTGGTAGAACGACTTATGTTCACTGTAAAGCAGGGAGGGGAAGGAGCACCACCATTGTTCTATGCTATTTGGTCAAGTATAAACACATGACTCCAGTTGCTGCCCTTGAATACGTGCGCTCCAAAAGACCTAGAGTGTTACTAGCTCCATTACAATGGGAAGCTGTTCAAGAATACAGCAAGCACCGGCCAGTTACTAGAGGATCTCCCTCAGGAGATGCAGTTATGATCACAAAAGCAGATCTTGAAGGGTATTATGGTAGTTGTTGTGAAAATACTGGTATGGAACTTGCGATTGTCCGGAAAGTGGCAAGGGCTAAGCCCATGATAGCCCGGTTATCTTGCCTCTTTGCATCGTTGAAAGTTAATAGTGGTTGCGGGCCAGTCACTAGGTGCCTTCCCATCCCCGAGGCTCGTGCTTGTTGA 858 45.1 MKIEELDGPASDRDEFVDVRKNLQIVKVDAKRALVGAGARILFYPTLLYNVLRNKMEPEFRWWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNESYETLVPSSLYQEYGIDHLTIPTRDYCFAPKSADISRAVDFIHKNASCGRTTYVHCKAGRGRSTTIVLCYLVKYKHMTPVAALEYVRSKRPRVLLAPLQWEAVQEYSKHRPVTRGSPSGDAVMITKADLEGYYGSCCENTGMELAIVRKVARAKPMIARLSCLFASLKVNSGCGPVTRCLPIPEARAC 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8657221 8659796 - Conep07aG0119600.1 Cone7ag1160 441756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1160 285 ProSitePatterns Tyrosine specific protein phosphatases active site. 151 161 IPR016130 GO:0016311(InterPro)
Cone7ag1160 285 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 130 198 IPR000387 GO:0016311(InterPro)
Cone7ag1160 285 CDD PTPMT1 62 206 IPR044596 GO:0004721(InterPro)
Cone7ag1160 285 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 55 205 IPR029021 -
Cone7ag1160 285 ProSiteProfiles Dual specificity protein phosphatase domain profile. 62 209 IPR020422 GO:0006470(InterPro)
Cone7ag1160 285 FunFam Dual specificity phosphatase domain protein 62 209 - -
Cone7ag1160 285 Gene3D Protein tyrosine phosphatase superfamily 62 208 IPR029021 -
Cone7ag1160 285 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 257 - -
Cone7ag1160 285 SMART dsp_5 65 206 IPR020422 GO:0006470(InterPro)
Cone7ag1160 285 Pfam Dual specificity phosphatase, catalytic domain 84 204 IPR000340 GO:0016311(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1160 Cone-Chr7:8657221 Cone8ag0418 Cone-Chr8:2586147 9.68E-93 dispersed
Cone4ag0974 Cone-Chr4:8426607 Cone7ag1160 Cone-Chr7:8657221 5.69E-196 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1160 - - - 0.0