Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone7ag1167 | ATGTCAAAATTACAACAAACTTTCAGCATTTCTAACATCAATATTGTTCATCTTGTTCTTATTCTTGTCCTCTTGCTCAATCCGACACGAACACAATGTCACACCAAGGGACTCCGACCCAGAAAATCTATTCCGAAAAGGCCACCGGAAATAAACACAACACAAACCCAGTTCGCAGAACAACAATTCATGAAGTGGGTCAAGTTTGTAGGAAGCTTAAAACACTCGGTATTCAAGACAGCTAAAAACAAGGTCTTTCCCTCTTATTCTCTCACTGTCGATAAAAATCCAGTGGTCGGAGACTTCACGTCGATTCAAGATGCGATTGACTCTCTACCGTTTATCAATCTTGTGAGAGTTGTGATCAAAGTGCATGCAGGAGTTTACACAGAGAAGGTTACTATACCTACATTGAAATCATTTATAACAATAGAAGGGGCAGGAGCAGATAAGACTATTGTTCAATGGGGAGACACTGCTCAAACACCTGGTCCTAAAGGGCTGCCCATGGGAACCTACAGTTCAGCCACTTTTGCCGTTAATGCCCCTTATTTCTTTGCCAAGAACATAACCTTCAAGAACACGACTCCTTTGCCAGCTCCAGGAGCTCAGGGAAAGCAAGCAGTGGCGTTTAGGATATCAGCCGACACGGCTGCGTTCATAGGTTGCAAATTTTTAGGAGCACAAGACACATTATACGATCATTTGGGCCGACATTATTACAAGGACTGTTACATCGAAGGTTCGGTCGATTTCATATTCGGCAATGCTCTCTCTTTGTTCGAGGGATGTCACGTACACGCGATAGCACAGTATACGGGGGCATTGACGGCACAGGGAAGGAGTAGTATGTTGGAGGACACGGGATTTTCATTTGTGAACTGTAAGGTCACGGGCTCAGGAGCATTGTACCTAGGAAGGGCATGGGGACCCTTCTCTAGGGTAGTCTTTGCTTATACATATATGGACAACATCATCCTCCCCAAAGGCTGGTATAACTGGGGTGACCCTAGCCGTGAGATGACTGTATTTTATGGGCAATATAAGTGCACCGGAGAAGGAGCAAGCTTTGCAGGAAGGGTGTCATGGTCTAGGGAACTCACTGATGAAGAAGCCAAGCCTTTTCTTTCTCTATCTTTCATTGATGGCTCCGAATGGATCAAATTCTAA | 1170 | 44.53 | MSKLQQTFSISNINIVHLVLILVLLLNPTRTQCHTKGLRPRKSIPKRPPEINTTQTQFAEQQFMKWVKFVGSLKHSVFKTAKNKVFPSYSLTVDKNPVVGDFTSIQDAIDSLPFINLVRVVIKVHAGVYTEKVTIPTLKSFITIEGAGADKTIVQWGDTAQTPGPKGLPMGTYSSATFAVNAPYFFAKNITFKNTTPLPAPGAQGKQAVAFRISADTAAFIGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQYTGALTAQGRSSMLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIILPKGWYNWGDPSREMTVFYGQYKCTGEGASFAGRVSWSRELTDEEAKPFLSLSFIDGSEWIKF | 389 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 8690853 | 8693020 | + | Conep07aG0120400.1 | Cone7ag1167 | 441763 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone7ag1167 | 389 | ProSitePatterns | Pectinesterase signature 2. | 246 | 255 | IPR033131 | - | |
| Cone7ag1167 | 389 | PANTHER | ACYL-COA THIOESTER HYDROLASE YBHC-RELATED | 36 | 388 | - | GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER) | |
| Cone7ag1167 | 389 | Pfam | Pectinesterase | 99 | 383 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
| Cone7ag1167 | 389 | FunFam | Pectinesterase | 87 | 389 | - | - | |
| Cone7ag1167 | 389 | Gene3D | - | 87 | 389 | IPR012334 | - | |
| Cone7ag1167 | 389 | SUPERFAMILY | Pectin lyase-like | 87 | 388 | IPR011050 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone13ag1236 | Cone-Chr13:9458454 | Cone7ag1167 | Cone-Chr7:8690853 | 5.21E-104 | dispersed | |
| Cone15ag0946 | Cone-Chr15:7515725 | Cone7ag1167 | Cone-Chr7:8690853 | 4.91E-90 | dispersed | |
| Cone16ag0473 | Cone-Chr16:6930958 | Cone7ag1167 | Cone-Chr7:8690853 | 7.41E-84 | dispersed | |
| Cone2ag0541 | Cone-Chr2:2997552 | Cone7ag1167 | Cone-Chr7:8690853 | 1.03E-86 | dispersed | |
| Cone5ag1415 | Cone-Chr5:8855432 | Cone7ag1167 | Cone-Chr7:8690853 | 2.30E-74 | dispersed | |
| Cone7ag0096 | Cone-Chr7:423917 | Cone7ag1167 | Cone-Chr7:8690853 | 1.05E-68 | dispersed | |
| Cone7ag1167 | Cone-Chr7:8690853 | Cone8ag0400 | Cone-Chr8:2461221 | 1.88E-103 | dispersed | |
| Cone5ag0995 | Cone-Chr5:4291864 | Cone7ag1167 | Cone-Chr7:8690853 | 2.36E-75 | transposed | |
| Cone4ag0761 | Cone-Chr4:4278843 | Cone7ag1167 | Cone-Chr7:8690853 | 4.39E-212 | wgd | |
| Cone4ag0965 | Cone-Chr4:8367654 | Cone7ag1167 | Cone-Chr7:8690853 | 2.05E-273 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone7ag1167 | K01051 | - | rcu:8265139 | 666.381 |