Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1170 ATGAAGAAAGTGATAATACTTTTCTTCCTCATTTCCCTCTCCAGCCATGGAACTTACTCTGAACCACTTTATGATCAAGAGCAAGCAGTCCTACTAGCCTTAGCCAATTACTGGCAAAATCCACCGTCTTTAAGCCACTGGACTTCATCATCCAACGTCTCTCATTGCTCCTGGCCAGAAATCAAATGCACAAACAATTCCATCACTCAACTCTCTGTCACTAAAAGGGACATACCACACACTATCCCACCTTTCATTTGTGACTTGAAAAATTTGACCCACCTTGATCTCCAATACAATTACATTCCCGGCCGATTCCCTACAATTCTCTACAACTGTTCTAAGCTTCAATACCTCGATCTTTCCCAAAACATCCTTGAGGGCCCCCTTCCGGAAGATATCGACCGGTTAACTGGGCTTCGTTACCTCAGCCTCGTAGCGAACAACTTTTCTGGAGAAATTCCGGCATCGATCGGACTGTTGTCGGAACTTAGACTCCTTTATCTTGACGTGAATCAGTTTAACGGTACTTACCCGGAGGATATAGGTAACTTGTCGAATTTAGAAGAGCTAACAATGGCTTATAACTTGAATTTTAAGGCAATGGAGATGCCTTCAAGTTTTACCAAGTTGAAGAAATTGAAGATGCTATGGATGGCTAGCTGCAACTTGATCGGGAAAATCCCGGAAAATATCGGTGACATGGCAGCTCTCAACTCTTTGGACTTATCTCGGAATAATCTTACCGGGAATTTACCGAGCAGTTTGTTTTTGTTGAAGAATCTTCGTTTACTTTATTTGTACAAGAATAAACTCTCCGGTGAAATTCCCGTAACGATTGAAGCTTCCGAGCTGACCGAGTTTGACCTTTCGGAAAACAATTTGACCGGGAAAATCCCATTTGCTGTCGGGAACCTCCAGAATCTGACAGTTTTGAATTTATTTTCGAATAAGTTATCCGGTGAGATTCCAGAAAGCATAGGCCGTCTTCCAGGTTTGAAAACCGTCAAGCTGTTTGCAAACAAATTTTCGGGCAGTTTGCCTCCAGATTTCGGGCAGTTTTCGGAGCTTGCAGGGTTCGAGGTTTCTTCGAATCAGTTAACGGGCAGCCTTCCGGAACATCTATGCAATGGAGGTAAGTTATTTGGCATAGTAGCTTTTGACAACAATCTTAGTGGTGAATTACCGGAATCGCTCGGAAATTGCAGTAGTTTGTTAATGCTTAATATTTATAACAATAACTTTTCCGGGAATTTACCGAGCGGTTTATGGACGTTGTCAAATATGTCTTATTTAATGATCCACCACAACTCTTTTTCCGGGGAGCTTCCGGAGAAAGTTTCGTGGAATCTTTCAAGGTTAGAAATGGGCCACAACAGATTCACTGGGAAGATTCCGATCGGGGTATCTTCTTGGAGGAAGTTGGCTGTGTTTGATGCCGGGAATAATATGTTTACAGGCTCGATCCCTCAAGAGCTCACGGCTCTTCCTGAATTAATCACTCTTTCTCTTCATCACAATGAATTCGACAGTGAATTACCGAAGAATATTATTTCGTGGACATCTTTGAGGAGTCTTGATCTTAGTCACAATAGTATTTCCGGGAAACTCCCAGAGGGGCTCGGTCACTTACCGAGTCTTACAGATTTAGACCTTTCCGACAATCAATTTTCCGGTCAGATTCCATCACAACTCGGTCTTCTAACGCTCACTTCCCTTAACCTTTCTTCTAATCATTTGACCGGAAATATCCCTAATGCATTTGAGAATTCAGCATATTCAAGGAGCTTCTTGAACAATCCAGGGCTTTGCATAAACAACCCGCTTATAAATTTCAACCGTTGTGATTCCAGGTTTCAAAAATCTAGCAAAATATCGTCGCATGATCTTGCTATGATTATAGGGTTGAGCATTTCAGTTTTTGTGCTGTCTCTGATATTTTGGTTCCTCACAGTAAGATTCTATTTAAAGAGAAAAGGAAGTAATTTAGTATGGAATGTGACCTCATTCCAAAAGTTGAATTTCACGGAGTCGAACATCTTGTCGGGATTGATTGAAAACAACGTGATTGGAAGTGGAGGGTCGGGGAAAGTTTACCGGGTACCAGTAAATCTTCTAGGAGATATCGTGGCGGTGAAGAGGATATGGAATAACAGAAAGCTCGAGAAGAAACTCGAGAAAGAGTTCATAGCAGAAGTTAAGGTACTAAGCTCGATCCGACATGCTAACATAGTCAAGTTGCTATGTTGTATTTCGAGTGATGACTCGAAACTTATAGTGTATGAGTACATGGAAAATCATAGCTTGGATAGATGGCTTCATGGTAAGAGTAGATTGGTTCGTAATGATGTGCTTGATTGGCCAAAGAGGTATCGTATTGCATTAGGGGCGGCTCAAGGGTTGTGCTACATGCACCATGAGTGTGAGACACCTATTGTTCATAGAGACGTGAAATCGAGTAATATTCTGTTGGATTCTGAGTTTAATGCAAGGATTGCCGATTTCGGTCTAGCTAAGATATTGATCAAGCACGGTGAACCGGCCTTCATGTCGGCTGTTGCAGGCACCTTCGGTTACATGGCTCCAGAATATGCTCATACAATGAGAGTGACCGAGAAAATAGATGTATACAGTTTCGGTGTCATTCTTCTAGAGCTAGCGACCGGACGGGAAGCTCATGAAGGTGGGGACAACACCTCCCTTGCAGAATGGGCCCTACGACATATACACCAAGGAAACGCCATTGACGATTTATTGGATGAGAAGATTAAGAAAGAGTGTTATGTGGAGGAAATTTGTCATGTTTTCAGGCTCGGAGTGATTTGTACCACGGCTTTGCCAGAAAACCGGCCTTCTATGAAAGAAGCTCTGCAGATTTTGCTCCGTTGTAGAGTCCTGCAAGGAGGAGAGAAGAAAAATAATGAATATGAAGATGGTCAGAATGGGAATTATTCTCCTCTTGCACATAATAATGCCTGA 2979 42.33 MKKVIILFFLISLSSHGTYSEPLYDQEQAVLLALANYWQNPPSLSHWTSSSNVSHCSWPEIKCTNNSITQLSVTKRDIPHTIPPFICDLKNLTHLDLQYNYIPGRFPTILYNCSKLQYLDLSQNILEGPLPEDIDRLTGLRYLSLVANNFSGEIPASIGLLSELRLLYLDVNQFNGTYPEDIGNLSNLEELTMAYNLNFKAMEMPSSFTKLKKLKMLWMASCNLIGKIPENIGDMAALNSLDLSRNNLTGNLPSSLFLLKNLRLLYLYKNKLSGEIPVTIEASELTEFDLSENNLTGKIPFAVGNLQNLTVLNLFSNKLSGEIPESIGRLPGLKTVKLFANKFSGSLPPDFGQFSELAGFEVSSNQLTGSLPEHLCNGGKLFGIVAFDNNLSGELPESLGNCSSLLMLNIYNNNFSGNLPSGLWTLSNMSYLMIHHNSFSGELPEKVSWNLSRLEMGHNRFTGKIPIGVSSWRKLAVFDAGNNMFTGSIPQELTALPELITLSLHHNEFDSELPKNIISWTSLRSLDLSHNSISGKLPEGLGHLPSLTDLDLSDNQFSGQIPSQLGLLTLTSLNLSSNHLTGNIPNAFENSAYSRSFLNNPGLCINNPLINFNRCDSRFQKSSKISSHDLAMIIGLSISVFVLSLIFWFLTVRFYLKRKGSNLVWNVTSFQKLNFTESNILSGLIENNVIGSGGSGKVYRVPVNLLGDIVAVKRIWNNRKLEKKLEKEFIAEVKVLSSIRHANIVKLLCCISSDDSKLIVYEYMENHSLDRWLHGKSRLVRNDVLDWPKRYRIALGAAQGLCYMHHECETPIVHRDVKSSNILLDSEFNARIADFGLAKILIKHGEPAFMSAVAGTFGYMAPEYAHTMRVTEKIDVYSFGVILLELATGREAHEGGDNTSLAEWALRHIHQGNAIDDLLDEKIKKECYVEEICHVFRLGVICTTALPENRPSMKEALQILLRCRVLQGGEKKNNEYEDGQNGNYSPLAHNNA 992
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8729005 8732574 - Conep07aG0120700.1 Cone7ag1170 441766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1170 992 FunFam Leucine-rich receptor-like protein kinase family protein 376 617 - -
Cone7ag1170 992 ProSitePatterns Protein kinases ATP-binding region signature. 690 713 IPR017441 GO:0005524(InterPro)
Cone7ag1170 992 Gene3D Phosphorylase Kinase; domain 1 667 763 - -
Cone7ag1170 992 Pfam Protein kinase domain 687 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag1170 992 SUPERFAMILY Protein kinase-like (PK-like) 675 961 IPR011009 -
Cone7ag1170 992 Pfam Leucine Rich Repeat 570 590 IPR001611 GO:0005515(InterPro)
Cone7ag1170 992 Pfam Leucine Rich Repeat 238 257 IPR001611 GO:0005515(InterPro)
Cone7ag1170 992 ProSiteProfiles Protein kinase domain profile. 684 961 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag1170 992 SMART LRR_sd22_2 259 274 - -
Cone7ag1170 992 SMART LRR_sd22_2 211 234 - -
Cone7ag1170 992 SMART LRR_sd22_2 89 121 - -
Cone7ag1170 992 SMART LRR_sd22_2 520 543 - -
Cone7ag1170 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag1170 992 SMART LRR_typ_2 567 590 IPR003591 -
Cone7ag1170 992 SMART LRR_typ_2 89 113 IPR003591 -
Cone7ag1170 992 SMART LRR_typ_2 544 566 IPR003591 -
Cone7ag1170 992 SMART LRR_typ_2 496 520 IPR003591 -
Cone7ag1170 992 SMART LRR_typ_2 161 185 IPR003591 -
Cone7ag1170 992 SMART LRR_typ_2 235 259 IPR003591 -
Cone7ag1170 992 SMART LRR_typ_2 426 450 IPR003591 -
Cone7ag1170 992 SMART LRR_typ_2 306 330 IPR003591 -
Cone7ag1170 992 SMART LRR_typ_2 521 543 IPR003591 -
Cone7ag1170 992 MobiDBLite consensus disorder prediction 978 992 - -
Cone7ag1170 992 FunFam Receptor-like protein kinase HSL1 664 763 - -
Cone7ag1170 992 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Cone7ag1170 992 CDD STKc_IRAK 690 962 - -
Cone7ag1170 992 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 181 279 - -
Cone7ag1170 992 ProSiteProfiles Leucine-rich repeat profile. 237 259 IPR001611 GO:0005515(InterPro)
Cone7ag1170 992 Gene3D Transferase(Phosphotransferase) domain 1 764 983 - -
Cone7ag1170 992 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 280 375 - -
Cone7ag1170 992 FunFam Kinase family with leucine-rich repeat domain-containing protein 764 977 - -
Cone7ag1170 992 MobiDBLite consensus disorder prediction 972 992 - -
Cone7ag1170 992 SUPERFAMILY RNI-like 285 592 - -
Cone7ag1170 992 ProSiteProfiles Leucine-rich repeat profile. 522 545 IPR001611 GO:0005515(InterPro)
Cone7ag1170 992 Pfam Leucine rich repeat 519 557 IPR001611 GO:0005515(InterPro)
Cone7ag1170 992 Pfam Leucine rich repeat 284 342 IPR001611 GO:0005515(InterPro)
Cone7ag1170 992 Pfam Leucine rich repeat 91 150 IPR001611 GO:0005515(InterPro)
Cone7ag1170 992 Gene3D Ribonuclease Inhibitor 379 491 IPR032675 -
Cone7ag1170 992 Gene3D Ribonuclease Inhibitor 177 282 IPR032675 -
Cone7ag1170 992 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 21 963 IPR050647 -
Cone7ag1170 992 Gene3D Ribonuclease Inhibitor 24 176 IPR032675 -
Cone7ag1170 992 Gene3D Ribonuclease Inhibitor 492 612 IPR032675 -
Cone7ag1170 992 Gene3D Ribonuclease Inhibitor 283 378 IPR032675 -
Cone7ag1170 992 SUPERFAMILY L domain-like 35 370 - -
Cone7ag1170 992 SMART serkin_6 684 961 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag1170 992 FunFam Receptor-like protein kinase HSL1 isoform A 24 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1141 Cone-Chr17:8408154 Cone7ag1170 Cone-Chr7:8729005 9.08E-129 dispersed
Cone7ag1170 Cone-Chr7:8729005 Cone9ag0992 Cone-Chr9:5100982 3.49E-86 dispersed
Cone17ag1151 Cone-Chr17:8480964 Cone7ag1170 Cone-Chr7:8729005 1.60E-72 wgd
Cone4ag0962 Cone-Chr4:8225421 Cone7ag1170 Cone-Chr7:8729005 3.38E-258 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83049 PF00013 KH_1 2.70E-14 CL0007 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1170 - - - 0.0