Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1205 ATGGCAAGCAAAACAAATAAAATCAATGGGCTTGTAATGTTCTCTTTCATCTTGCTTAGAGTTTTCTCAGCCATGGCAGAAAATACAACAATCCCAGTTAAAATCGGAGTGGTTCTTGAAACTAAAACATGGTTTGGGAAGATGAGTTTGAGCTCCATCGATCTGGCCCTCTCAGACTTCTATTCCTCTCCAATGGGGTCCGATTACAAAACCAGGCTAGTTTTGTACCCAAGGGATAATTCAAATGCAGATTCTGTTGGTGCAGCTGCTGCAGCTCTAGACTTGATAAAGAATGTACAAGTACAAGCCATTCTAGGCCCAGACAGTTCAAATGAGGCTAAGTTCATGATCAATCTCGGAGAAAAAGCTCATGTGCCCATAATCTCATTTTCCTCAACAAGCCCTTCTCTATGTTCAATCAAGAGTTCATATTTTTTCCAAGCAACCCAATCTGATGCATCTCAAGTCAAAGCCATTAGTGCAATCATTGAAACCTTTGGATGGAGAAAAGCTGTGCTTATTTACGTAGATGACGACTTTGGTGAAGGTATTATACCAATCTTGACAGATGCTTTGCAACAAGTCAACGTGCAAGTCGTGTACCACAGTGCAATACCTCGTGCGGCAACTGATGATCAAATCGTCGAAGAGCTTTACAAGTTAATGGCAATGCCAACTAGAGTCTTCATTGTTCATATGTTACCAAGTCTAGGCTCTCACTTATTCACCAAGGCAAAAGAGATAGGAATGATTAGTGGTGATTATGTTTGGATTGTTACTAATGGGATGCTGAACTTACTTAGTCCCACTAATGATCGGTCGGTTCTTGAATCAATGCATGGCGTATTAGGCATAAAGACTTATGTTCCGAATACACAAAAGCTCAAAGATTTTCTGCTTAGATGGAAGAGGAAATTCCACAAGGATAATCCAAATTATATTTCTAAATCAGATTTGAATATTTTCGGATTGTGGGCTTATGATACTACTTTTGCGCTAGCCATGGCAGTTGAGAAGGTCGGGGCTATGAACTTTGGCTTTATAAATAGCAATTCTAATAAGCCAAATGTTTCTATTAACTCAAAAATAGATCTTGAGACATTTGGGATATCTCAAAATGGTCCAAGACTGGTTGAGGAATTATCAAAAATATCATTCAGAGGCTTGTCCGGAGAGTTTAGTCTGGTGGATCAACGACTGAATTCATCGACTTTTCAGATTATTAACGTGAACGGTAATAGGGAAAGAAACATTGCATTTTGGACCCGACAAAACGGATTGAGCAAAGGGTTAGAATCAACAAACATAAATAAGTACTCTACTTCAAAAGTGAATCTACGACACGTCATATGGCCCGGGGATTCTACTTCTGTTCCACGAGGTTGGGTGGTTGCGACAAATGGCAAGAAGCTGAAAATAGGGATTCCAAATAATAGTGGCCCGGATCACTTTGTGAGAATTTTGTCTCATGATCCGAACACTAAAACGGCTAAGGCAACTGGTTATAGCATAGAAGTTTTTGAAGCTGTGATTGGGGCATTACCGTATGCCGTTTCCTATGAATATATTGTTTTTGCAAACACCGGTGACGTAGGTCCCAGAAGTTATGACGACTTGGTCGATCAAGTGCGTCTCGGGAATTTTGATGCCGCAGTGGGAGACATAACTATTAGAGAAAACAGATCCAAAGACGTAGAATTCACGTTGCCATATACTCAATCGGGCGTCTCAATGGTTGTGCAAATCAAAGGCCAAAGGAGCAACAGTGCATTTAATTTCGTAAAGCCTTTGACATGGGATCTTTGGTTGACAAGTGCTTGCTTTTTTGTGTTCATTGGTTTTGTCGTCTGGATTCTCGAACACAACATAAATGACGATTTCAAGGGACCTCTCTCTCACCAAATTGGAACAAGCTTCTGGTTTTCTTTCTCCACCATGGTTTTCGCACGAGGACAGAATGTTCATAGCAACTTGGCGAGATTCGTGGTGGTGGTCTGGTTATTCGTGGTTCTAGTACTAACTCGAAGCTACACTGCTAGTTTAACTACTTAA 2052 40.59 MASKTNKINGLVMFSFILLRVFSAMAENTTIPVKIGVVLETKTWFGKMSLSSIDLALSDFYSSPMGSDYKTRLVLYPRDNSNADSVGAAAAALDLIKNVQVQAILGPDSSNEAKFMINLGEKAHVPIISFSSTSPSLCSIKSSYFFQATQSDASQVKAISAIIETFGWRKAVLIYVDDDFGEGIIPILTDALQQVNVQVVYHSAIPRAATDDQIVEELYKLMAMPTRVFIVHMLPSLGSHLFTKAKEIGMISGDYVWIVTNGMLNLLSPTNDRSVLESMHGVLGIKTYVPNTQKLKDFLLRWKRKFHKDNPNYISKSDLNIFGLWAYDTTFALAMAVEKVGAMNFGFINSNSNKPNVSINSKIDLETFGISQNGPRLVEELSKISFRGLSGEFSLVDQRLNSSTFQIINVNGNRERNIAFWTRQNGLSKGLESTNINKYSTSKVNLRHVIWPGDSTSVPRGWVVATNGKKLKIGIPNNSGPDHFVRILSHDPNTKTAKATGYSIEVFEAVIGALPYAVSYEYIVFANTGDVGPRSYDDLVDQVRLGNFDAAVGDITIRENRSKDVEFTLPYTQSGVSMVVQIKGQRSNSAFNFVKPLTWDLWLTSACFFVFIGFVVWILEHNINDDFKGPLSHQIGTSFWFSFSTMVFARGQNVHSNLARFVVVVWLFVVLVLTRSYTASLTT 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8956852 8967963 + Conep07aG0124200.1 Cone7ag1205 441801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1205 683 SUPERFAMILY Periplasmic binding protein-like II 448 607 - -
Cone7ag1205 683 SMART GluR_14 482 669 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone7ag1205 683 FunFam Glutamate receptor 155 315 - -
Cone7ag1205 683 Pfam Ligated ion channel L-glutamate- and glycine-binding site 490 581 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone7ag1205 683 Gene3D - 471 590 - -
Cone7ag1205 683 FunFam Glutamate receptor 470 590 - -
Cone7ag1205 683 Gene3D - 158 314 - -
Cone7ag1205 683 Pfam Ligand-gated ion channel 598 682 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone7ag1205 683 Gene3D - 591 683 - -
Cone7ag1205 683 FunFam Glutamate receptor 370 469 - -
Cone7ag1205 683 Pfam Receptor family ligand binding region 51 413 IPR001828 -
Cone7ag1205 683 SUPERFAMILY Periplasmic binding protein-like I 32 462 IPR028082 -
Cone7ag1205 683 PANTHER OS06G0188250 PROTEIN 16 496 IPR015683 -
Cone7ag1205 683 Gene3D - 315 470 - -
Cone7ag1205 683 Gene3D - 53 157 - -
Cone7ag1205 683 CDD PBP1_GABAb_receptor_plant 34 431 IPR044440 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1205 Cone-Chr7:8956852 Cone7ag1639 Cone-Chr7:11075409 2.05E-233 dispersed
Cone7ag1205 Cone-Chr7:8956852 Cone7ag1635 Cone-Chr7:11055723 3.03E-255 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1205 K05387 - mdm:139187527 758.444