Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1220 ATGAAGATGAAAGATCGAGGTCCTGCTTTGATATTCCAACAACAACAAGCTGGCAATGTGGAGGAGAACATGTCCAATCTGACTTCAGCTTCAAATGATCAAATAAGTGTTTCTTCAGGCAATCTTAATAGAAGTAGTACTATTCATGATCAGATAATAGGAATCAGGAGCAGCAGCAGCTATATGAATACCGATCATAATCATCAACAACACTATAATTTTTCTCCTCGTCCAGATCAACTTCCTCAAACTCAAACCCTCAAGAAGAAAAGAAACCTTCCAGGCAACCCAGCACCAGAAGCAGAAGTGATAGCTCTATCACCCAAGACGCTAATGGCAACAAACAGATTCATATGTGAGATATGCAACAAAGGGTTTCAAAGAGATCAGAACCTTCAACTTCATAGAAGAGGGCATAATCTGCCATGGAAGCTGAAGCAAAGGACAAGCAAAGAGATAAGGAAGAAGGTGTATGTTTGTCCAGAAGCTGGGTGTGTTCATAACGACCCTGCTAGGGCTCTAGGTGACTTGACAGGGATCAAGAAGCACTTTAGCAGGAAGCACGGTGAGAAGAAGTGGAAATGTGAAAAGTGCTCGAAGAAATATGCTGTTCAATCCGATTGGAAAGCTCATTCTAAGACTTGTGGCACTAAAGAGTACAGATGTGACTGTGGAACTATTTTCTCAAGGAGGGACAGTTTCATCACTCACAGAGCTTTCTGTGATGCTTTGGCAGAGGAGAGTGCAAGAGTCAATAATTTAATCACAACAAACCCACTTCTGATCTCCTCTTCATCAATCTCACAATTCAACCTTCAATCCCAATTCAACCTTCAAGATCTCCCTCCTCATCAATTTTCTTTAAAGAAAGAGCAAGATAACTTCAGTACCAGGACTCCTAATTTTCCAACATGGTTGTCTTGTCCTCCTGGCCCACCATCAATCCTAATTAATAATCAAGATCATCGATTCACTCAACTCCACCATGAATATCATGATCATCATCAGTCTCCAAACCCTAACCCTAATCTTAGTCCTACTACAAATTTTCCTAGCTACCAAACAACATCTTCACCGAACATGGCAGCCACTGCATTGCTACAAAAAGCAGCCCAAATGGGTGCAACAATGAGTAGTACCAAAACATCATGTCACGTGTCTGCAGATTCTTCTGCTACGCCTGCAGGCAATAATACTAATAATGCTACGAGTTGTAGTAATTTTGGAATTAATTTGGTCTCACGTGAAGAAGTAGAAGAAGAAATGGGCACCACAAGTGGGTTTTCCCATAAAGCATCTGCAACAATTTCTTCAGGGCTAATTGATAGTATAAATCCTTCCAATTCAGCACTTTTTACTGATTTAATGAATACTTTCAGTAATTCGGCATCTGGGTTTGAAGGGATATCTTCTTTTGAGGAAGCATTTGGTGGGATTTTGATGAATTCCAAAAGGGAAAATACTGGCCAATTATTAAGTAATACTAGCACCGATGAAAATGGTGGCCGTGGTGGTGATCATGGAGGCAATGGTGGTGGCGGCGGCTGTGGTGCGGGCGGCAGTTTAAGTGAGGGTTTGACTAGAGATTTCTTGGGCTTAAGAGCTTTGTCACATAGTGGTATTCTCAACATTCCTGGTATTGGTAATTGCATGAACACTACTACTAGTACTACTTCTCAAACTAGTCATCAAAATCAAATACAAAGACCATGGCAAGGTTAG 1722 41.06 MKMKDRGPALIFQQQQAGNVEENMSNLTSASNDQISVSSGNLNRSSTIHDQIIGIRSSSSYMNTDHNHQQHYNFSPRPDQLPQTQTLKKKRNLPGNPAPEAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEAGCVHNDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYRCDCGTIFSRRDSFITHRAFCDALAEESARVNNLITTNPLLISSSSISQFNLQSQFNLQDLPPHQFSLKKEQDNFSTRTPNFPTWLSCPPGPPSILINNQDHRFTQLHHEYHDHHQSPNPNPNLSPTTNFPSYQTTSSPNMAATALLQKAAQMGATMSSTKTSCHVSADSSATPAGNNTNNATSCSNFGINLVSREEVEEEMGTTSGFSHKASATISSGLIDSINPSNSALFTDLMNTFSNSASGFEGISSFEEAFGGILMNSKRENTGQLLSNTSTDENGGRGGDHGGNGGGGGCGAGGSLSEGLTRDFLGLRALSHSGILNIPGIGNCMNTTTSTTSQTSHQNQIQRPWQG 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9051517 9054166 - Conep07aG0125700.1 Cone7ag1220 441816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1220 573 Gene3D Classic Zinc Finger 99 163 - -
Cone7ag1220 573 MobiDBLite consensus disorder prediction 331 356 - -
Cone7ag1220 573 ProSitePatterns Zinc finger C2H2 type domain signature. 119 139 IPR013087 -
Cone7ag1220 573 MobiDBLite consensus disorder prediction 337 356 - -
Cone7ag1220 573 MobiDBLite consensus disorder prediction 490 516 - -
Cone7ag1220 573 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 70 551 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone7ag1220 573 MobiDBLite consensus disorder prediction 553 573 - -
Cone7ag1220 573 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 192 216 - -
Cone7ag1220 573 ProSiteProfiles Zinc finger C2H2 type domain profile. 117 139 IPR013087 -
Cone7ag1220 573 Pfam Zinc finger, C2H2 type 117 139 IPR013087 -
Cone7ag1220 573 FunFam protein indeterminate-domain 12-like 96 164 - -
Cone7ag1220 573 MobiDBLite consensus disorder prediction 61 82 - -
Cone7ag1220 573 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 219 256 - -
Cone7ag1220 573 SUPERFAMILY beta-beta-alpha zinc fingers 116 213 IPR036236 -
Cone7ag1220 573 FunFam protein indeterminate-domain 5, chloroplastic-like 171 250 - -
Cone7ag1220 573 Gene3D Classic Zinc Finger 172 251 - -
Cone7ag1220 573 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 154 188 - -
Cone7ag1220 573 SMART c2h2final6 193 213 IPR013087 -
Cone7ag1220 573 SMART c2h2final6 158 188 IPR013087 -
Cone7ag1220 573 SMART c2h2final6 117 139 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0793 Cone-Chr3:4085646 Cone7ag1220 Cone-Chr7:9051517 6.99E-95 dispersed
Cone4ag1898 Cone-Chr4:13515979 Cone7ag1220 Cone-Chr7:9051517 9.99E-101 dispersed
Cone6ag1610 Cone-Chr6:12459846 Cone7ag1220 Cone-Chr7:9051517 3.50E-100 dispersed
Cone7ag1220 Cone-Chr7:9051517 Cone9ag1538 Cone-Chr9:11184713 1.72E-98 dispersed
Cone17ag0096 Cone-Chr17:514643 Cone7ag1220 Cone-Chr7:9051517 7.41E-116 wgd
Cone4ag0926 Cone-Chr4:7625461 Cone7ag1220 Cone-Chr7:9051517 1.20E-272 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46537 PF00885 DMRL_synthase 3.50E-49 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1220 K25870 - vvi:109123222 515.383