Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1258 ATGAGAAGGTTTAGCTGGCTTAGCACTTGCCGGCGGTGTTTGGTGTCATCTATGGCTACAGAATCCGCTATTGATCAACGGAATTGGTTTGGCAGAGTATCAGAATTTCGTCGAACATTGTTTCACGCACGAGGCTTGCACAGTTGTACTTCTTCTTTTGGGAAACCTCCTGAGTTTGCAACCACAGAATTGCTGTGGAGCAATCGTTTCATACATTCATCAGCATCTCGCTTTGCGAGTGAACGTGACTACTACGAAATTCTTGGTGTAAGTGAAGATGCAAAGCGGGATGAGATTAAGAAGGCCTATCATGCGTTGGCGAAGAAGTACCATCCTGATGCAAACAAGAACAATCCTTCAGCAAAGAGGAAATTTCAGGAGATAAGAGATGCCTACGAGATTTTGCAAGATTCTGAAAAGAGGGCACAGTATGATAGGCGGCGCATAAGAGGTTCTGAAAATATGGAATTTGGTGCTGGGGGTGCAGAGGGGTTTAGATATGCTAATCGTGCTCATTTTTCTGATTCATTCCATAAAATATTTTCCGAGATCTTTGAAGACAAGACCTATCATTTTGCATCTGATATCCAGGTAGAGTTGTCGCTCTCCTTCACAGAAGCCTCTAAGGGATGCACAAAGCTTTTGTCATTTGATGCCTCTGTTCCTTGTGATTCCTGCTATGGAAGTGGCCATCCACCCGATGCCAAGAAAAAAGTTTGTCCAACTTGTAGAGGTGTAGGGAGAATTACTGTTCCTCCATTTACATCAACATGCAGCACTTGTAAAGGATCAGGTGAAGTAATTAAGGAGTTCTGTATGTCATGCAGAGGATCAGGGGTGGTTGAAGGCACCAAGGAGGTCAAAGTCACAATACCTGCAGGTGTGGAAACTGGAGATACGATCCGTGTACCAGAAGCTGGAAATACTGGAGGACGAGGAAGCCACCCAGGGAATTTGTTTATTAAATTGAAGGTTGCTGAAGATCCTACTTTTAAGAGAGATGGTGCAGATGTTTATGTGGATTCCAATATCACCCTTACCCAAGCTATTCTTGGAGGCAAGGTTGAGGTGCCAACTTTGTCCGGCAAGTTACTAGTAAATGTACCAAAAGGGGTTCAGCCTGGACAACTTCTAGTACTAAGAGGCAAAGGACTTCCAAAACATGGTTTTCTTGTTGATCATGGAAATCAATATGTGCGATTCCGTATTAAATTTCCAATAGAGGTGAATGAACGCCAGCGTGCTATATTAGAAGAATTTGCGGAGGAGGAAATAAAGAATGAGAGCAACTCTGATAAAGAAAGTTGGTGGCATCAAATTATTGAGCGTACCACTGCTCCTAAGTTTATGGTGGAATTATCTCTGTTCATACTGATCCTTCTGTTCTTAAACAAAACAACGGGCTGA 1407 43.0 MRRFSWLSTCRRCLVSSMATESAIDQRNWFGRVSEFRRTLFHARGLHSCTSSFGKPPEFATTELLWSNRFIHSSASRFASERDYYEILGVSEDAKRDEIKKAYHALAKKYHPDANKNNPSAKRKFQEIRDAYEILQDSEKRAQYDRRRIRGSENMEFGAGGAEGFRYANRAHFSDSFHKIFSEIFEDKTYHFASDIQVELSLSFTEASKGCTKLLSFDASVPCDSCYGSGHPPDAKKKVCPTCRGVGRITVPPFTSTCSTCKGSGEVIKEFCMSCRGSGVVEGTKEVKVTIPAGVETGDTIRVPEAGNTGGRGSHPGNLFIKLKVAEDPTFKRDGADVYVDSNITLTQAILGGKVEVPTLSGKLLVNVPKGVQPGQLLVLRGKGLPKHGFLVDHGNQYVRFRIKFPIEVNERQRAILEEFAEEEIKNESNSDKESWWHQIIERTTAPKFMVELSLFILILLFLNKTTG 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9341436 9348694 + Conep07aG0129500.1 Cone7ag1258 441854

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1258 468 Pfam DnaJ C terminal domain 196 406 IPR002939 -
Cone7ag1258 468 ProSiteProfiles Zinc finger CR-type profile. 210 284 IPR001305 GO:0031072(InterPro)|GO:0051082(InterPro)
Cone7ag1258 468 Pfam DnaJ central domain 223 279 IPR001305 GO:0031072(InterPro)|GO:0051082(InterPro)
Cone7ag1258 468 CDD DnaJ_C 194 406 - -
Cone7ag1258 468 FunFam Molecular chaperone DnaJ 215 284 - -
Cone7ag1258 468 CDD DnaJ 83 137 IPR001623 -
Cone7ag1258 468 SUPERFAMILY HSP40/DnaJ peptide-binding domain 194 333 IPR008971 GO:0006457(InterPro)|GO:0051082(InterPro)
Cone7ag1258 468 ProSitePatterns Nt-dnaJ domain signature. 125 144 IPR018253 -
Cone7ag1258 468 Gene3D - 218 252 - -
Cone7ag1258 468 Gene3D - 254 287 - -
Cone7ag1258 468 Gene3D DnaJ domain 79 193 IPR036869 -
Cone7ag1258 468 ProSiteProfiles dnaJ domain profile. 83 148 IPR001623 -
Cone7ag1258 468 PRINTS DnaJ domain signature 85 103 IPR001623 -
Cone7ag1258 468 PRINTS DnaJ domain signature 103 118 IPR001623 -
Cone7ag1258 468 PRINTS DnaJ domain signature 120 140 IPR001623 -
Cone7ag1258 468 PRINTS DnaJ domain signature 140 159 IPR001623 -
Cone7ag1258 468 FunFam Chaperone protein dnaJ 1, mitochondrial 326 434 - -
Cone7ag1258 468 Gene3D - 327 439 - -
Cone7ag1258 468 Pfam DnaJ domain 83 145 IPR001623 -
Cone7ag1258 468 CDD DnaJ_zf 223 279 IPR001305 GO:0031072(InterPro)|GO:0051082(InterPro)
Cone7ag1258 468 Hamap Chaperone protein DnaJ [dnaJ]. 80 445 IPR012724 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0009408(InterPro)|GO:0051082(InterPro)
Cone7ag1258 468 SMART dnaj_3 82 140 IPR001623 -
Cone7ag1258 468 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 210 282 IPR036410 -
Cone7ag1258 468 SUPERFAMILY Chaperone J-domain 79 170 IPR036869 -
Cone7ag1258 468 Gene3D - 194 323 - -
Cone7ag1258 468 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 49 425 - GO:0005737(PANTHER)|GO:0042026(PANTHER)|GO:0051082(PANTHER)|GO:0051085(PANTHER)
Cone7ag1258 468 SUPERFAMILY HSP40/DnaJ peptide-binding domain 331 417 IPR008971 GO:0006457(InterPro)|GO:0051082(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1258 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1089 Cone-Chr20:7539930 Cone7ag1258 Cone-Chr7:9341436 1.15E-69 dispersed
Cone4ag1067 Cone-Chr4:9289566 Cone7ag1258 Cone-Chr7:9341436 7.86E-64 dispersed
Cone7ag1258 Cone-Chr7:9341436 Cone17ag0322 Cone-Chr17:1519864 6.62E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g26 . Blo06g00765 . Bda10g00889 . Bpe10g00717 Bma10g00669 . . Cmo17g00636 . . . Car14g01069 . Cpe12g00555 . Bhi01g02835 . . . . . . . . . . . . . . . Cone7ag1258 . Lsi02g02861 Csa07g02313 . Cme01g02766 Blo07g00805 . Bda05g00623 . Bpe03g00693 . . . Sed04g2378 Cmo01g00019 . . Cma17g00656 . Car17g00618 . . Bhi09g00271 Tan06g0071 Cmetu01g1064 . Hepe03g1390 . . Cla09g00122 Cam09g0131 Cec09g0134 Cco09g0135 Clacu09g0138 . Cre09g0123 . Csa03g02792 Chy01g02133 Cme04g01382
Vvi18g470 . . Bda01g00899 . . . . . Cmo05g00549 . . . . . . . . Bhi04g00799 . . . . . Lcy13g1511 Cla08g01139 Cam08g1598 Cec08g1169 Cco08g1296 Clacu08g1298 . Cre08g1081 . Cone7ag1258 . . . . . Cme03g01833 . Blo18g00120 . . . . Bma01g01394 . . . . . Cma05g00520 Car05g00471 . . . . . . . . . . . . . . . . . Lsi08g00997 Csa02g02181 Chy03g01336 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011221 1 3 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 30