Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1260 ATGGCTCTAGAAACTGTGGTCTACCCTCAAGACAGTACGTCTACTACAACAAGCACAATATTCAGCTGCGGTATCAAGAACGTCTTCTCCGCATCATCCGGGGGAGGATTCTCCGGCAGCGGCGTCTGGGGTAATATCGATCATCACCATCTCACAGACATGGAAATTGCTATTCATGATCAGGTGTATGTGAAGGATAAGTACTATAACGATCAGTACTTGCCCTATTCTAATTACTCTTCACCTGATCAAAATCTCCTGCAAGTTCCAGCACCTGACGTGGATGAGCTCCTCTGGCCTTCGTTTACGGAGTCACCAGCTCCAGCAAGATCAGTACTATTCACATCGACCGGTAGCAGTAGTAGTAGAAGGAGGAAAAGAAGGAGGTGCAATAAGAGCACGAAGGACAAGGAACAGATGGAGAATCAAAGGATGACTCACATTGTAGTGGAGAGAAACCGCCGCAAGCAGATGAATCACTACCTTGCCCATCTCCGCTCCTTGATGCCTCCTTCTTACGTTCAAAGGGGTGACCAAGCATCTATTATAGGGGGGGCAATTAATTTTGTGAAACAGCTAGAGCAGCACTTGCAATTCATTCAGGCCCATAAGTACTTACAACAACCACTTGATCATCATCATCTCCCATCTGATCCATTTGCTGAGTTCTTCACCTTCCCGCAGTACTCGACACGAGCATCAACTTCTCCGACCAAAGAGGAGGAAGAGGAGCCACCGCTCTTTGCGGCAGATATTGAAGTCACGATGTCGGACAGCCATGCAAACCTTAAAATACAGTCTAAAAAACAGCCTAAGCAGCTGTTGAAGCTGGTTGTTGGGCTTCAGAGCTTGAGGCTTAGTGTTCTTCACCTTAATGTTACCACCACCCCGGATCAAATAGTCCTCTACTCATTTAGTGTTAAGGTAGAAGAAGAGTGCCAACTGAGTACAAAGGATGACATAGCAGCGGCAGTTAATCAAATGATACATGCAATTAATCAAAAGGAGGTTACTTTCAGCTAA 1023 45.94 MALETVVYPQDSTSTTTSTIFSCGIKNVFSASSGGGFSGSGVWGNIDHHHLTDMEIAIHDQVYVKDKYYNDQYLPYSNYSSPDQNLLQVPAPDVDELLWPSFTESPAPARSVLFTSTGSSSSRRRKRRRCNKSTKDKEQMENQRMTHIVVERNRRKQMNHYLAHLRSLMPPSYVQRGDQASIIGGAINFVKQLEQHLQFIQAHKYLQQPLDHHHLPSDPFAEFFTFPQYSTRASTSPTKEEEEEPPLFAADIEVTMSDSHANLKIQSKKQPKQLLKLVVGLQSLRLSVLHLNVTTTPDQIVLYSFSVKVEEECQLSTKDDIAAAVNQMIHAINQKEVTFS 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9361322 9362549 + Conep07aG0129700.1 Cone7ag1260 441856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1260 340 PANTHER MAX DIMERIZATION, MAD 107 328 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone7ag1260 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 205 IPR036638 GO:0046983(InterPro)
Cone7ag1260 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 193 IPR011598 GO:0046983(InterPro)
Cone7ag1260 340 Coils Coil 123 143 - -
Cone7ag1260 340 MobiDBLite consensus disorder prediction 110 142 - -
Cone7ag1260 340 Gene3D - 131 215 IPR036638 GO:0046983(InterPro)
Cone7ag1260 340 Pfam Helix-loop-helix DNA-binding domain 143 194 IPR011598 GO:0046983(InterPro)
Cone7ag1260 340 ProSiteProfiles ACT domain profile. 262 340 IPR002912 -
Cone7ag1260 340 SMART finulus 148 199 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0750 Cone-Chr3:3894037 Cone7ag1260 Cone-Chr7:9361322 1.24E-56 dispersed
Cone4ag1316 Cone-Chr4:10820470 Cone7ag1260 Cone-Chr7:9361322 1.67E-183 dispersed
Cone5ag0020 Cone-Chr5:133301 Cone7ag1260 Cone-Chr7:9361322 1.48E-62 dispersed
Cone7ag0388 Cone-Chr7:1711919 Cone7ag1260 Cone-Chr7:9361322 1.71E-35 dispersed
Cone17ag1201 Cone-Chr17:8768360 Cone7ag1260 Cone-Chr7:9361322 5.06E-80 wgd
Cone20ag0528 Cone-Chr20:2865702 Cone7ag1260 Cone-Chr7:9361322 1.18E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46540 PF04548 AIG1 2.70E-79 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1260 - - - 0.0