Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1262 ATGGCTCTGCTTCGTCTTCCCCATTTCCCATCTACCACCTTCTTCCACTCCGAACCTCAACACCAACAACAGTCACAGAAGCACAAAGTCTCTCTCTTCACCTCTCTATCATCATCGCTGCAAAAATCGCATCTATTATCTACTACCCATAGCAAAAATGATACTAACTCCTCCTTCTTCAGGACCCAGAAAAGAATAAGCAAATCCCTTCTTCTGTCCAACTTCTCTTCTTCAACCTCTCAAGAACAACAAACCCTAGATATCTCCTTACCTAATGCTTCCCCTTCGAAAATTGAGACCGAAGAGGAAGTGTTTTCCCAAATTAGATTGCTTGCCCAGAATGTTCCTTGGTCTTCTACACCTGAAGATATTCGTGCCCTCTTTGAAAAGTACGGCACTGTCCTAGACGTCGAGCTTTCAATGTACAACAAGAGCAGAAACAGAGGATTAGCATTTGTCACAATGGGATCTCCTGAGGAAGCTCTTGCTGCTCTCACTAATCTCGAATCGTTTGAATTGGAAGGTCGTGTATTGAAGATCAATTATGCCAAGGAAAAGAAGAAGAAACCAGCTTCCCCTCCAGTTCAACCCAAACCGGTAACATTCAATTTATTCGTTGCGAACTTATCGTACGAAGCAAGGGCGAAAGACCTCAAGGAATTCTTCGATTCTGGTAGCAGTAGCGTTGATTCTGCTCAAATCATATTTCATGAAAATCCTAGAAGATCTTTAGGATATGGCTTTGTGGCGTTCAAATCCAAGAAGGATGCTGAGGCTTCCCTTGTGGACTTTCAAGGAAAGTCTTTCATGGGGAGGCCGATTAGAGTAGCTCGTAGTAAACAGTTTGTGAAACAGCCAATGGAGGAGAAATCTGAATCTGAAGTTATATCAAGTGAAAGTGGTTTGGAGCAAGAAGATGGAGCTAATGAGAATTGA 936 42.74 MALLRLPHFPSTTFFHSEPQHQQQSQKHKVSLFTSLSSSLQKSHLLSTTHSKNDTNSSFFRTQKRISKSLLLSNFSSSTSQEQQTLDISLPNASPSKIETEEEVFSQIRLLAQNVPWSSTPEDIRALFEKYGTVLDVELSMYNKSRNRGLAFVTMGSPEEALAALTNLESFELEGRVLKINYAKEKKKKPASPPVQPKPVTFNLFVANLSYEARAKDLKEFFDSGSSSVDSAQIIFHENPRRSLGYGFVAFKSKKDAEASLVDFQGKSFMGRPIRVARSKQFVKQPMEEKSESEVISSESGLEQEDGANEN 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9373907 9375606 + Conep07aG0129900.1 Cone7ag1262 441858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1262 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 281 IPR000504 GO:0003723(InterPro)
Cone7ag1262 311 PANTHER OS02G0815200 PROTEIN 23 279 IPR050502 GO:0003729(PANTHER)|GO:0009535(PANTHER)|GO:1901259(PANTHER)
Cone7ag1262 311 MobiDBLite consensus disorder prediction 282 296 - -
Cone7ag1262 311 Gene3D - 16 188 IPR012677 -
Cone7ag1262 311 Gene3D - 189 294 IPR012677 -
Cone7ag1262 311 SUPERFAMILY RNA-binding domain, RBD 95 191 IPR035979 GO:0003676(InterPro)
Cone7ag1262 311 SMART rrm1_1 203 277 IPR000504 GO:0003723(InterPro)
Cone7ag1262 311 SMART rrm1_1 109 181 IPR000504 GO:0003723(InterPro)
Cone7ag1262 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 185 IPR000504 GO:0003723(InterPro)
Cone7ag1262 311 MobiDBLite consensus disorder prediction 281 311 - -
Cone7ag1262 311 SUPERFAMILY RNA-binding domain, RBD 192 284 IPR035979 GO:0003676(InterPro)
Cone7ag1262 311 Pfam RNA recognition motif 204 275 IPR000504 GO:0003723(InterPro)
Cone7ag1262 311 Pfam RNA recognition motif 113 179 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1262 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g454 . Blo12g00716 . . Bpe02g00125 . . Bma01g02601 . . . . . . . Cpe06g00441 . . . . . . . . . . . . . . . . Cone7ag1262 . . Lsi04g02259 Csa03g04470 Chy04g00231 . . . Bda11g00780 . . . . . Sed13g2155 . . . . . Car09g00508 . Cpe02g00355 Bhi09g02471 Tan01g3820 Cmetu04g0043 . Hepe01g2151 Mch11g0689 . Cla11g01404 Cam11g1461 Cec11g1489 Cco11g1485 Clacu11g1622 Cmu11g1439 Cre11g1858 . . . Cme04g00257
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009555 1 1 2 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 32