Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1292 ATGTCGAAGATGAAGCATCTTCTGAGGAAGCTTCACATCGGAGGTGGAATTAACGATCACCAGAGATTGCCGCAAACGCAGTCAGTAGTCGATACGAAGTTGAATCACGATGCATCGGTTTCTACTTCTTCGTTATCTCCGGTTTCTTCGGATCCAATGGGGAGGTTCGAGGCAGTTGATACGCCGAGTGATCGGACGGTTGGGGATGCTGGCGGTGGCTGCGTCGATTTCGATTTCTTGGAGGAGGAGTTTCAGTTGCAGATGGCTATGGCGATTAGCGCTTCGGATCCCGGTACAAGAGAAGACCCCGAGTCTGCTCAGATCGATGCCGCAAAGCGGATGAGCCTTGGCTGTTCGTCTTCGGTCTCCGACAGCCAAGCCCTAATTGGATTGTTATCGCTTCAGTATTGGAGCTATAATGCCGTAAATTATGATGAAAAAGTGATGGATGGATTTTATGACATTTATGGAATTACCACAAATTCAATCACACAAGGGAAGATGCCATTGTTGGTGGATCTCCAAGCTATTTCTGTTTCTAGAGAGGTTGATTATGAAGTGATATTGGTAAATCGCTTGATTGATACTGAACTTCAGGAGTTGGAGAGTCGAGCTGATGCTGTATCCATGGACTGTAGAGTTTCTGACCATGGACTTATTCTAAGTGGCCTTATTCAAAAAATTGCTGATATTGTGGTTGATAGGATGGGTGGTCATGTTAATGATGCTGATGAAATGCTCAGAAGGTGGACTACTAGGAGCTATGAGTTACGAAGGTCTCTTAAAACTATTATTCTACCTATCGGACGTCTTGACATTGGACTTTCTCGCCATAGAGCTTTGCTTTTCAAGGTTCTAGCTGACAAGATTAATCTACCCTGTATGCTGGTCAAAGGAAGCTACTACACAGGGACTGATGATGGTGCTGTGAACTTGATTAAACTTGACAATGGAAGTGAATATATCATTGATCTAATGGGTGCTCCTGGCACACTCATTCCTTCGGAAGTACCTAGCACCCAGCTACCAAATTATGGCTTTGATCTTAGGCGGTTCTCAGATGTTACAGAAACATCAAAATATAAGTTTCTGGCACTTGGTGAAGGAACCCAAACAGTGGGAATTTCAACGGATCTGGGTGTAGCAACCAAAGCTGACAGCTCAATGTCCAAAAAAGTATCCTTTGCAGGTATTCAGGCAGAAGAAGTTGGCAGTTATGTTTTTGAAGAGAGTGAAGGTGGAAGGTTAGATGATGAATCTGGGAGGCGTCCTGGGTCACAGAAACTTCCATGTGGAAACACATCAGGTCCACATGTAAAAGCATCGTGTGCACAAAAGAAGAAAGTCAAAAGTGTATCCCAGTACGTTATTAGTGCTGCAAAGAACCCTGAGTTTGCTCAAAAACTACATGCCGTGTTGTTAGAAAGCGGTGCATCACCTCCTCCGGATTTGTTTGTAGATATAGATTCCCAAAATATTGGTGGACGAGAACTACCTGGACAAGTTCTTCAAGTTAATGGAAGAAGTATAGCTGATGAGTTACCATATAATCGATATGATCAATCAGCAACTCACGAACCATCTACTGGTGGAGTAGACTCTTGGTATACTATTTATGAAAGTCAACAGAAACATTCTGCTGAAGGCTTTGCTGAACAACAAAGAGAATTGGAGACCATTTCCAGGAACCTCCATATTTCTTCAGTTTCTAGTATGACCAGTGAGGGATTTGTGTTTGTGGGTGGTCGAGCCAGTGATATGATCCCTGTAGACACTACAGGTGTAAGTGATGCTGTTGGGTGTCTGTCTGGAATGATTGCAAGCGCTTTGGACGATCACACTGGCAAACCCTTATTGACCTCTGAGGCTACATCTTGCCAAAGACAACTTGATGACAAGAATGAAAGTGTTTTCAATAGAACTGATTTAGGGGAAGAATCATCGGTGGAATTGATGGAGATGACAAACACTGGCCTGCAGATTACTGGTGGTTGTCGCAGTGAGAAGATTTTCCCAGAGTTGGGTGAGGTTGCAGAATGGGAAATTCCATGGGACGACCTTCACATTGGTGAACGTATTGGTATTGGTTCATATGGTGAGGTCTATCGTGCTGATTGGAATGGCACTGAAGTTGCTGTGAAGAAGTTCCTGGACCAAGATTTCTCTGGTGATGCACTGGTTCAATTGAAATGTGAAGTTGAAATCATGTTGAGACTGAGACATCCTAATGTTGTCCTCTTCATGGGAGCTGTAACTCGCCCCCCTCATTTCTCTATTCTGACAGAGTTTCTGCCCAGGGAAAGTTTGTATAGATTATTGCATCGTCCCAATTCTCAACTTGATGAAAAGAAACGATTGAGGATGGCTCTTGATGTGGTCAAGGGAATGAATTACTTACACACAAGCCATCCTACCATTGTTCATCGAGATTTAAAATCCCCAAATCTTCTTGTTGATAAAAACTGGGTTGTTAAGGTTTGTGATTTTGGTTTGTCACGCATAAAGAACAACACTTTTCTGTCTTCAAAGTCAACTGCTGGAACGCCTGAATGGATGGCTCCTGAAGTTCTAAGGAATGAACCAGCTAATGAGAAGTGTGATGTGTACAGTTTTGGTGTGATTTTGTGGGAATTGGCTACTTGTCAAATCCCATGGAAGGGTTTAAACCCAATGCAAGTAGTCGGAGCTGTTGGATTCCAAAATAGGCGTCTTGAGATTCCAAATAATGTCGATCCAGCAGTTTCTCAGATCATATGTGATTGTTGGCAAATGGAGGCACACTTGAGACCATCATTTTCTCAACTAATGTCTCAGCTAAGGCATCTTGAGCATCTCGTCATTGATAGACCGGATTCTTCAACCAGAAGAACAGGATGA 2877 43.24 MSKMKHLLRKLHIGGGINDHQRLPQTQSVVDTKLNHDASVSTSSLSPVSSDPMGRFEAVDTPSDRTVGDAGGGCVDFDFLEEEFQLQMAMAISASDPGTREDPESAQIDAAKRMSLGCSSSVSDSQALIGLLSLQYWSYNAVNYDEKVMDGFYDIYGITTNSITQGKMPLLVDLQAISVSREVDYEVILVNRLIDTELQELESRADAVSMDCRVSDHGLILSGLIQKIADIVVDRMGGHVNDADEMLRRWTTRSYELRRSLKTIILPIGRLDIGLSRHRALLFKVLADKINLPCMLVKGSYYTGTDDGAVNLIKLDNGSEYIIDLMGAPGTLIPSEVPSTQLPNYGFDLRRFSDVTETSKYKFLALGEGTQTVGISTDLGVATKADSSMSKKVSFAGIQAEEVGSYVFEESEGGRLDDESGRRPGSQKLPCGNTSGPHVKASCAQKKKVKSVSQYVISAAKNPEFAQKLHAVLLESGASPPPDLFVDIDSQNIGGRELPGQVLQVNGRSIADELPYNRYDQSATHEPSTGGVDSWYTIYESQQKHSAEGFAEQQRELETISRNLHISSVSSMTSEGFVFVGGRASDMIPVDTTGVSDAVGCLSGMIASALDDHTGKPLLTSEATSCQRQLDDKNESVFNRTDLGEESSVELMEMTNTGLQITGGCRSEKIFPELGEVAEWEIPWDDLHIGERIGIGSYGEVYRADWNGTEVAVKKFLDQDFSGDALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPRESLYRLLHRPNSQLDEKKRLRMALDVVKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRIKNNTFLSSKSTAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELATCQIPWKGLNPMQVVGAVGFQNRRLEIPNNVDPAVSQIICDCWQMEAHLRPSFSQLMSQLRHLEHLVIDRPDSSTRRTG 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9521345 9527262 + Conep07aG0133100.1 Cone7ag1292 441888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1292 958 MobiDBLite consensus disorder prediction 410 439 - -
Cone7ag1292 958 Gene3D Phosphorylase Kinase; domain 1 680 764 - -
Cone7ag1292 958 PRINTS Tyrosine kinase catalytic domain signature 847 857 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag1292 958 PRINTS Tyrosine kinase catalytic domain signature 800 818 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag1292 958 PRINTS Tyrosine kinase catalytic domain signature 761 774 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag1292 958 PRINTS Tyrosine kinase catalytic domain signature 866 888 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag1292 958 PRINTS Tyrosine kinase catalytic domain signature 910 932 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag1292 958 SMART serkin_6 687 947 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag1292 958 FunFam Serine/threonine-protein kinase CTR1 766 949 - -
Cone7ag1292 958 ProSitePatterns Serine/Threonine protein kinases active-site signature. 806 818 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag1292 958 PANTHER SERINE-THREONINE PROTEIN KINASE 129 942 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cone7ag1292 958 Gene3D Transferase(Phosphotransferase) domain 1 767 949 - -
Cone7ag1292 958 ProSitePatterns Protein kinases ATP-binding region signature. 693 715 IPR017441 GO:0005524(InterPro)
Cone7ag1292 958 SUPERFAMILY Protein kinase-like (PK-like) 677 945 IPR011009 -
Cone7ag1292 958 FunFam Serine/threonine-protein kinase isoform 1 678 765 - -
Cone7ag1292 958 ProSiteProfiles Protein kinase domain profile. 687 947 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag1292 958 CDD STKc_MAP3K-like 693 939 - -
Cone7ag1292 958 Pfam Protein tyrosine and serine/threonine kinase 687 939 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag1292 958 Pfam Ethylene-responsive protein kinase Le-CTR1 132 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1732 Cone-Chr1:58090753 Cone7ag1292 Cone-Chr7:9521345 5.12E-217 dispersed
Cone5ag0529 Cone-Chr5:2234623 Cone7ag1292 Cone-Chr7:9521345 1.56E-221 dispersed
Cone7ag0865 Cone-Chr7:6610121 Cone7ag1292 Cone-Chr7:9521345 8.58E-106 dispersed
Cone7ag1292 Cone-Chr7:9521345 Cone8ag0327 Cone-Chr8:1876727 1.18E-106 dispersed
Cone17ag0924 Cone-Chr17:7256256 Cone7ag1292 Cone-Chr7:9521345 4.91E-175 wgd
Cone20ag0268 Cone-Chr20:1190376 Cone7ag1292 Cone-Chr7:9521345 0 wgd
Cone4ag1661 Cone-Chr4:12479695 Cone7ag1292 Cone-Chr7:9521345 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83056 PF07738 Sad1_UNC 2.70E-33 CL0202 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1292 K04424 - csv:101214554 1140.95