Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1303 ATGGATTTCATGAAGGTATTTGATCAAACTGTGCGAGAAATAAAGAGGGAGGTAAATCTGAAGGTTCTGAAAGTACCCGAAATTGAACAAAAGGTTTTGGATGCAACTGATAATGAGCCATGGGGTCCTCATGGATCTGCTTTGGCAGAGATAGCTCTGGCCACTAAAAAATTTACTGAGTGCCAGATGGTTATGAATGTTCTATGGACAAGATTGACTGAGACTGGTAAGGACTGGCGCTATGTCTATAAGGCATTGGCTGTCATTGAGTACTTGGTGGCAAATGGATCTGAGCGTGCTGTTGATGACGTTGTAGAACACACTTTTCAAATCTCAGCACTTACAAGTTTTGAATATGTGGAGCCAAGTGGAAAGGATGTGGGAATAAATGTTAGGAAGAAGGCAGAAAACATTATTACCCTTCTGAATAATAAAGATAAAATACAAGAAGTAAGAAATAAAGCTGCTTCTAACCGCGACAAGTACTTTGGACTTTCCTCTTCCGGGATTACGTACAAGTCAAGTTCATCTGCATTTGGTAGCGGGGCCTCTTTGAGTAGTAGTGATCGCTATGGAGGGGCACGAGACAGTGATAGTTTCAGTGGTGGTTACAGAGAAAGGGATACCTATAGAGATAGTAAAACTGATGAGGATGATTCTGCAAAGAATCAAGATAACACCTTGAAGAGTAAATCAGGCTATCACAGGAGGGAGCCACAGAGTACAACATCAAGTGCATCAAAGTCATCAACAAAATCAAAAGACACTAGTGACTACAATTCAGTTCCCCCTCATAGCTCAAGCATTAATCTAAATAATTATGAAGCTGATTTCGATGACTTTGACCCACGCGGAACTTCCAGCTCCAAGGTCCCATCGGGAGGTGCTCCTCAGGTGGATCTTTTTGGACCAAACTTGATTGACGACTTCATGGATGCTCCAACCTCTGCTGCTACAGAAAAGCCCTCCATGACCAGAAGTTCTTCTGACGTTGATCTGTTTGCAGATGCAACTTTTGTATCAGCACCATCCCATGCACAAAATGGATCAAGCTCTGAATCTCAGAATAATGTTGATCTATTTGCTACACAGACAACCATTCCTCCAGTTTCTTCGCCAGTTGACCTTCTTGCAGCCCCCACTCCGGTTACACAGTTAGAAGCCAAGTCCCCCCCAAGCTCTGCTTCAAATATCGTTGATCCCTTTGCTGCTGTTCCACTTAACACATTTGACGGTTCAGATCTTTTCGGGGCATTCACTTCTCAATCCGATCCAGTCTCATCTGAGCCCTCACAGAATCCTCCTATTAATGGTAGTGACCATAGTCATCTGGGTGGACAATCTTTCACTGAATCAAAATCTCCACCCAAGAAAGATGGTTTCCAGGTGAAATCTGAAGTTTGGGCAGATTCATTAACCCGTGGACTCATAGATCTTAACATATCTGCACCTAAGAAGGTATCCTTGGTAGATGTGGGAGTTGTGGGTGGATTGAGCGACATGTCGGATGTAAGAGAGAAAGGGCCCCCAACATATAACATGGGGAGAGCTATGGGTGCTGGGTCTGGGCTTGGTAGGTCCGGCCCATCAGGGTCCCCCACTTCGTCACCGGCAGTGGGAGGCGACGACTTCTTTTCACAACTTCGTGGTCGCCAATACCAATTCGGTGGCTTCCAAAAGTAA 1683 44.56 MDFMKVFDQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGSALAEIALATKKFTECQMVMNVLWTRLTETGKDWRYVYKALAVIEYLVANGSERAVDDVVEHTFQISALTSFEYVEPSGKDVGINVRKKAENIITLLNNKDKIQEVRNKAASNRDKYFGLSSSGITYKSSSSAFGSGASLSSSDRYGGARDSDSFSGGYRERDTYRDSKTDEDDSAKNQDNTLKSKSGYHRREPQSTTSSASKSSTKSKDTSDYNSVPPHSSSINLNNYEADFDDFDPRGTSSSKVPSGGAPQVDLFGPNLIDDFMDAPTSAATEKPSMTRSSSDVDLFADATFVSAPSHAQNGSSSESQNNVDLFATQTTIPPVSSPVDLLAAPTPVTQLEAKSPPSSASNIVDPFAAVPLNTFDGSDLFGAFTSQSDPVSSEPSQNPPINGSDHSHLGGQSFTESKSPPKKDGFQVKSEVWADSLTRGLIDLNISAPKKVSLVDVGVVGGLSDMSDVREKGPPTYNMGRAMGAGSGLGRSGPSGSPTSSPAVGGDDFFSQLRGRQYQFGGFQK 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9590028 9593817 - Conep07aG0134200.1 Cone7ag1303 441899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1303 560 MobiDBLite consensus disorder prediction 174 194 - -
Cone7ag1303 560 FunFam Clathrin interactor 1 18 165 - -
Cone7ag1303 560 SMART enth_2 26 152 IPR013809 -
Cone7ag1303 560 MobiDBLite consensus disorder prediction 200 236 - -
Cone7ag1303 560 MobiDBLite consensus disorder prediction 418 460 - -
Cone7ag1303 560 Pfam ENTH domain 27 147 IPR013809 -
Cone7ag1303 560 ProSiteProfiles ENTH domain profile. 20 152 IPR013809 -
Cone7ag1303 560 PANTHER EPSIN/ENT-RELATED 4 537 - GO:0005543(PANTHER)|GO:0005768(PANTHER)|GO:0005886(PANTHER)|GO:0006897(PANTHER)|GO:0030125(PANTHER)|GO:0030276(PANTHER)
Cone7ag1303 560 MobiDBLite consensus disorder prediction 418 455 - -
Cone7ag1303 560 MobiDBLite consensus disorder prediction 527 541 - -
Cone7ag1303 560 CDD ENTH 28 144 - -
Cone7ag1303 560 MobiDBLite consensus disorder prediction 505 544 - -
Cone7ag1303 560 SUPERFAMILY ENTH/VHS domain 7 152 IPR008942 -
Cone7ag1303 560 MobiDBLite consensus disorder prediction 174 298 - -
Cone7ag1303 560 MobiDBLite consensus disorder prediction 237 274 - -
Cone7ag1303 560 Gene3D - 21 164 IPR008942 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1303 K12471 - - vvi:100264697 652.899
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0628 Cone-Chr11:3988650 Cone7ag1303 Cone-Chr7:9590028 3.45E-62 dispersed
Cone18ag0876 Cone-Chr18:6150965 Cone7ag1303 Cone-Chr7:9590028 4.02E-61 dispersed
Cone4ag1645 Cone-Chr4:12414029 Cone7ag1303 Cone-Chr7:9590028 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g46 . . . . . . . . Cmo05g00117 Cmo12g00561 . Cma05g00111 . Car12g00571 . Cpe07g00544 . Bhi04g00480 . . . Hepe08g1372 . Lcy13g2167 . . . . . . . Cone4ag1645 Cone7ag1303 . . . . . . . . . . . . . . . . . . Cma12g00623 . Car05g00096 Cpe11g00091 . . . . . . . . . . . . . . . Lsi08g01563 Csa02g01858 Chy03g01627 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006203 1 2 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 1 1 1 38