Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone7ag1305 | ATGATGATCGGAGAAAAAGCCCGGTTAATCCCGAGCATTGAAGTCCCTCCATGGGACCCACTCGACGATTCCAGAACACGATCACCATTCTCTATCACGAGTCCCTCCGTCATCCGCAACGGAAATGCCGGAAACGGCGATCCTGTCCTAGACTATATCAGGACGATGCACCGTTACCTTACGTCCAATGAGTTCGCCGGCGTAGAGTCTGACCCGCCGGATACTGAGGAATTCGACATGGCTGTGGACGCTTTCTCATGCGATCATTTCCGCATGTTCGAGTTCAAGGTCAGAAAGTGCGCACGTGCGAGGTCACATGACTGGACGGACTGTCCGTACGCTCATCCGGCTGAGAAGGCTCGCCGGAGAGATCCGAGGAAGTACCACTACTCCGGTACGGCGTGTCCGGAGTTTCGGAAAGGGATTTGCAAGAAGGGGGACGCGTGTGAGTTCGCTCATGGAATATTCGAGTGCTGGCTCCATCCTACTCGTTATCGGACACAACCTTGCAAAGACGGACTCGGCTGTCGCAGGCGTGTGTGCTTTTTCGCCCACTCTCCGGAACAACTCCGGGTCCTGTCTCAGCAGAGTCCGGGAAGCCTTGGGTCGGGCGATTCCTTTGATGGATCTCCGCCTCGTCAGACTCACCGTCATGCATTCGAGTCCTACCTAGAAAAGATGGCCATGGTCTCATCGCCGCCACTTTCACCGTCGTCCCCGTCCGTACCGCCAAACAGTGCTGAACACGGTTGCCATTGTGGTTCCGTTTACAACTTTACCCCTTCCTGTCGGCTCGTCGCGTTAATGCGCGATCTGCATCTCGACAAGACGAAAATGAATCCTCAATGGAACGTTCAGATGGATCCTGGTTGTGGGTCGACGATCCGTACCGGATTTAACAGCATGCCTTCGACTCCGACCCGAACTTCCACTCTATCTGGGCTAGGTGCAGTTGATCACTGGAGCATAGGTGCTGAAGAAGAGCACGCAATGGAAAGGGTTGAATCTGGGAAATATTTGCGCGACAAGATATATGCCGAACTCAGTCGGGATAACTCAGTGGGTCAAGGCCGCAACTCGGCCGTTTCAGCTCCTGATGTTGGCTGGGTGTCTGAGCTAGTAAAGTGA | 1128 | 54.34 | MMIGEKARLIPSIEVPPWDPLDDSRTRSPFSITSPSVIRNGNAGNGDPVLDYIRTMHRYLTSNEFAGVESDPPDTEEFDMAVDAFSCDHFRMFEFKVRKCARARSHDWTDCPYAHPAEKARRRDPRKYHYSGTACPEFRKGICKKGDACEFAHGIFECWLHPTRYRTQPCKDGLGCRRRVCFFAHSPEQLRVLSQQSPGSLGSGDSFDGSPPRQTHRHAFESYLEKMAMVSSPPLSPSSPSVPPNSAEHGCHCGSVYNFTPSCRLVALMRDLHLDKTKMNPQWNVQMDPGCGSTIRTGFNSMPSTPTRTSTLSGLGAVDHWSIGAEEEHAMERVESGKYLRDKIYAELSRDNSVGQGRNSAVSAPDVGWVSELVK | 375 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 9597418 | 9598545 | - | Conep07aG0134400.1 | Cone7ag1305 | 441901 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone7ag1305 | 375 | Gene3D | - | 125 | 199 | - | - | |
| Cone7ag1305 | 375 | ProSiteProfiles | Zinc finger C3H1-type profile. | 130 | 156 | IPR000571 | GO:0046872(InterPro) | |
| Cone7ag1305 | 375 | FunFam | Zinc finger CCCH domain-containing protein 66 | 87 | 155 | - | - | |
| Cone7ag1305 | 375 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 133 | 154 | IPR000571 | GO:0046872(InterPro) | |
| Cone7ag1305 | 375 | MobiDBLite | consensus disorder prediction | 195 | 210 | - | - | |
| Cone7ag1305 | 375 | SMART | c3hfinal6 | 129 | 155 | IPR000571 | GO:0046872(InterPro) | |
| Cone7ag1305 | 375 | SMART | c3hfinal6 | 164 | 187 | IPR000571 | GO:0046872(InterPro) | |
| Cone7ag1305 | 375 | PANTHER | UNKEMPT FAMILY MEMBER | 47 | 375 | IPR045234 | - | |
| Cone7ag1305 | 375 | MobiDBLite | consensus disorder prediction | 195 | 215 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone7ag0724 | Cone-Chr7:4337825 | Cone7ag1305 | Cone-Chr7:9597418 | 6.26E-93 | dispersed | |
| Cone7ag1137 | Cone-Chr7:8577193 | Cone7ag1305 | Cone-Chr7:9597418 | 3.20E-103 | dispersed | |
| Cone17ag0910 | Cone-Chr17:7172447 | Cone7ag1305 | Cone-Chr7:9597418 | 2.33E-115 | wgd | |
| Cone4ag1644 | Cone-Chr4:12410916 | Cone7ag1305 | Cone-Chr7:9597418 | 2.85E-262 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 46543 | PF00332 | Glyco_hydro_17 | 1.40E-99 | CL0058 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone7ag1305 | - | - | - | 0.0 |