Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1308 ATGGAAGAATATCATCAGCTTGGCGAGAACACAGCTCCGAGGGGGAATTTCTTGTATGCTTCGCCTGTTCTTGCAGCGAATTCTCCATCCAGTAATTATGGACGATCTAGTAGAGGTGGGTCAAACATGGGTAATAATCAGACGGCCCAGATGACAATCCACACTTTCCATCCTCTTCATAATTCGGGCGGTAGTGATTGTTTTGATCATCATCAACACCCAACTGTTAAAACAGAAGGCAGCACTTCAGTACAGCACCAACAGCAGCATCATGTTCATCACAATTTGAACTATTCTCTAATGAGATCAGCTGGATCCAACGGCCCAAACCCTCCGATTCAGCTCCGACAAGCTGGTGTGGATGAGCCTTGTAATAATAATAATAGTAGTAATAATAGTAATGATGTTGAAGCTATTAAGGCGAAGATCATAGCTCATCCTCAGTATTCCAACCTCTTAGAAGCTTACATGGACTGTCAGAAGGTGGGAGCTCCACCAGAAGTGGTGGCTTGTCTAGCAACAGCACGGCAAGAATTTGAGGCCCGGCAGCGATCCACGCTGGCATCCAGAGATGGTTTGAATAAGGACCCAGAACTAGATCAGTTCATGGAAGCTTATTACGACATGCTGGTGAAATATCGAGAGGAGCTAACAAGGCCTATACAAGAAGCTATGGATTTTATGCGTCGGATCGAGTCTCAGCTTAGCACCCTTTGCAATGGACCAGTTCGGATCTTCAACTCCGATGAGAAGTTGGAAGGTATCGGATCATCCGAGGAGGATCAGGAAAACAGCGGTGGCGAAACTGAACCGCCGGAGATTGATCCGGGTGCAGAGGACCGAGAATTGAAGAACCACCTATTGAGAAAATATAGTGGCTACCTAAGTAGTCTCAAGCAAGAGCTTTCCAAAAAGAAGAAGAAAGGTAAACTACCAAAAGATGCAAGGCAGAAGCTACTTAGCTGGTGGGAATTACATTACAAATGGCCATATCCTTCTGAGACAGAAAAGGTGGCATTGGCTGAATCAACCGGATTAGACCAGAAACAAATCAATAACTGGTTCATTAACCAAAGGAAGAGGCACTGGAAACCTTCTGAAGACATGCAGTTTATGGTGATGGATGGGCTTCACCCTCCTGCAGCCGCTCTTTACATGGATGGTCACTTTATTGGCGACGGCCACTATCGACTAGGGCCGTGA 1203 45.89 MEEYHQLGENTAPRGNFLYASPVLAANSPSSNYGRSSRGGSNMGNNQTAQMTIHTFHPLHNSGGSDCFDHHQHPTVKTEGSTSVQHQQQHHVHHNLNYSLMRSAGSNGPNPPIQLRQAGVDEPCNNNNSSNNSNDVEAIKAKIIAHPQYSNLLEAYMDCQKVGAPPEVVACLATARQEFEARQRSTLASRDGLNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIESQLSTLCNGPVRIFNSDEKLEGIGSSEEDQENSGGETEPPEIDPGAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPAAALYMDGHFIGDGHYRLGP 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9610040 9612918 + Conep07aG0134700.1 Cone7ag1308 441904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1308 400 CDD homeodomain 314 366 IPR001356 GO:0003677(InterPro)
Cone7ag1308 400 Pfam KNOX1 domain 138 180 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone7ag1308 400 ProSitePatterns 'Homeobox' domain signature. 340 363 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone7ag1308 400 ProSiteProfiles ELK domain profile. 282 302 IPR005539 GO:0003677(InterPro)
Cone7ag1308 400 ProSiteProfiles 'Homeobox' domain profile. 302 365 IPR001356 GO:0003677(InterPro)
Cone7ag1308 400 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 139 372 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone7ag1308 400 SMART ELK_2 282 303 IPR005539 GO:0003677(InterPro)
Cone7ag1308 400 SMART KNOX2_2 189 240 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone7ag1308 400 Gene3D - 307 369 - -
Cone7ag1308 400 SMART HOX_1 304 369 IPR001356 GO:0003677(InterPro)
Cone7ag1308 400 Pfam ELK domain 282 303 IPR005539 GO:0003677(InterPro)
Cone7ag1308 400 SUPERFAMILY Homeodomain-like 303 379 IPR009057 -
Cone7ag1308 400 SMART KNOX1_2 137 181 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone7ag1308 400 FunFam Homeobox protein knotted-1-like 2 307 369 - -
Cone7ag1308 400 Pfam Homeobox KN domain 322 361 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone7ag1308 400 MobiDBLite consensus disorder prediction 253 278 - -
Cone7ag1308 400 MobiDBLite consensus disorder prediction 28 47 - -
Cone7ag1308 400 Pfam KNOX2 domain 194 239 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1044 Cone-Chr19:7712741 Cone7ag1308 Cone-Chr7:9610040 7.14E-82 dispersed
Cone5ag1845 Cone-Chr5:12953241 Cone7ag1308 Cone-Chr7:9610040 9.16E-94 dispersed
Cone7ag1308 Cone-Chr7:9610040 Cone7ag1682 Cone-Chr7:11259269 2.64E-32 dispersed
Cone4ag1642 Cone-Chr4:12394528 Cone7ag1308 Cone-Chr7:9610040 4.61E-271 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46544 PF01230 HIT 3.60E-23 CL0265 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1308 - - - 0.0