Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1311 ATGTTCGGAAAACAAATGGGTTCTGGTAAAGGCCAAGATGATGTTCACGACGATAACAATATGGCCGGTCTTGTTCTTGGACTCGGCTATGACGCTAAACCGACAGAGACGATCAATTCGTCATCTCTGCCGGAGTCCGATTACCGTCAGCAACAAGATCAAATCGTGAAGAAGAAGTTGTCGTTGAAATTTGACAATGATTTCCCATCTCTTGCTCTAGGACTTGTTTCAGATGATCAGACCTGCCCGTCTGTAGGTTATACTTGCAAGATTGAAGATGAAAAGACTGATGATCGTCAGCATCACATGCGCTCCTTACCAGCATCGTCTGCTAGTGCAGCGACGTCGTTTTCTAACTCGTGTAGTATCAAGAGGGACAGAGAGGTAGACGTTGAAGCGGAGGCTGAGATGGCTGAGGTGGAGTTGGAGAGAGTTTCCTCGAGGGTCAGTGACGATCATGATCGTGATCAGGAAGATGATCAAGATGATCATGATCAGGCTAGTCCTAGAAAGAAACTCAGACTCACCAAGGAACAATCTTCTGTTCTTGAAGAAAGCTTCAAGGACAACACCACTCTCAACTCCAAGCAAAAGCAAGAATTGGCCAAACGGCTAAACCTAAGGCCAAGACAAGTGGAAGTGTGGTTCCAAAACAGGAGAGCCAGGACAAAGCTGAAGCAAACAGAGGTGGAGTGCGAGTTACTGAAAAAATGTTGTGAAAAACTAGCAGAAGAGAACAAAAGGTTGATGAAAGAGCTTCAAGAGCTTAAATCAATAAAATCAGCTGCTCAAGTCGCGCCGTTCTATATGCAGCTACAAGCCGCCGCCACGCTCACCATATGCCCTTCCTGTGATCTTCGTCGTCATCCTCCCTCTCCTATTACTAGACCCAAGCCTCAACTAATTTCAAATGCATTTAACCACCCATCTGCGACTTGCTTCCTTAGCTAG 951 45.95 MFGKQMGSGKGQDDVHDDNNMAGLVLGLGYDAKPTETINSSSLPESDYRQQQDQIVKKKLSLKFDNDFPSLALGLVSDDQTCPSVGYTCKIEDEKTDDRQHHMRSLPASSASAATSFSNSCSIKRDREVDVEAEAEMAEVELERVSSRVSDDHDRDQEDDQDDHDQASPRKKLRLTKEQSSVLEESFKDNTTLNSKQKQELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECELLKKCCEKLAEENKRLMKELQELKSIKSAAQVAPFYMQLQAAATLTICPSCDLRRHPPSPITRPKPQLISNAFNHPSATCFLS 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9619411 9620799 - Conep07aG0135000.1 Cone7ag1311 441907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1311 316 ProSitePatterns 'Homeobox' domain signature. 201 224 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone7ag1311 316 Coils Coil 225 266 - -
Cone7ag1311 316 Pfam Homeodomain 170 224 IPR001356 GO:0003677(InterPro)
Cone7ag1311 316 MobiDBLite consensus disorder prediction 105 122 - -
Cone7ag1311 316 SUPERFAMILY Homeodomain-like 159 227 IPR009057 -
Cone7ag1311 316 SMART HOX_1 168 230 IPR001356 GO:0003677(InterPro)
Cone7ag1311 316 SMART halz 226 272 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone7ag1311 316 CDD homeodomain 169 227 IPR001356 GO:0003677(InterPro)
Cone7ag1311 316 FunFam Homeobox-leucine zipper protein 18 154 231 - -
Cone7ag1311 316 Pfam Homeobox associated leucine zipper 226 259 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone7ag1311 316 Gene3D - 174 224 - -
Cone7ag1311 316 ProSiteProfiles 'Homeobox' domain profile. 166 226 IPR001356 GO:0003677(InterPro)
Cone7ag1311 316 MobiDBLite consensus disorder prediction 1 20 - -
Cone7ag1311 316 MobiDBLite consensus disorder prediction 93 181 - -
Cone7ag1311 316 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 94 288 IPR050762 -
Cone7ag1311 316 MobiDBLite consensus disorder prediction 123 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1311 Cone-Chr7:9619411 Cone9ag0657 Cone-Chr9:3125555 5.24E-45 dispersed
Cone12ag0188 Cone-Chr12:964039 Cone7ag1311 Cone-Chr7:9619411 7.59E-45 wgd
Cone4ag1641 Cone-Chr4:12388560 Cone7ag1311 Cone-Chr7:9619411 2.62E-128 wgd
Cone6ag1484 Cone-Chr6:11792840 Cone7ag1311 Cone-Chr7:9619411 2.43E-48 wgd
Cone7ag1311 Cone-Chr7:9619411 Cone8ag0182 Cone-Chr8:956996 5.37E-40 wgd
Cone7ag1311 Cone-Chr7:9619411 Cone9ag1406 Cone-Chr9:10475756 6.72E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46545 PF00254 FKBP_C 1.20E-35 CL0487 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1311 K09338 - mdm:103455849 203.756