Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1318 ATGAAGTCCGATCAATCGAAGCTTTTCGTCGGGGGAATTTCGCGGGAAACAAGTGAAGATGCTCTCGAAGAGCATTTTGAAGCGTACGGTTCTGTTTCGGGTTCGATCGTCGCTAGAGATCGATGCACCAAGAACTCTAGAGGATTTGGTTTCGTTTGGTTCTGTGACAGATCTTCCGCTGATAGAGCCCTTCAAGACAAGCATATTATTCTGGGAAGAACGGTTGAAGTGAAAAAGGCTGTACCCAGAACTGAACATGTCCCAAATCAACAACGGAGTAGTAGAGGATCAAGTATGTCTGGTAGAAACGAGTTCAACAATTATCAAAATAGTACTAAAAAGATATTTGTAGGTGGTTTATCAGCTAGTCTAACCGAAGATGAATTCAGAAATTACTTTGAAAAGTATGGTAGGATATCAGATTTAGTGGTGATGCATGACAGTGTAACTCAACGCCCTAGAGGGTTCGGTTTTATCACCTTTGACTCGGAGGAAGCTGTTGAGAATGTCATGAAGAAAAGCTTCCATGAACTGAGTGGCGGTTTTGTTGAGGTGAAGAGAGCTATACCTAAAGAGGTTAAGAACATCACTGGCTACAACAATTCCACCGAAGGAGTTAAAGATGTAAGAGCGTATGTTGATAATAACGCTGTTCAAATTCCTGGACATTACCCACTTATGGGTCCTAGCTTTGGATCAGTTCCTCTTCATGGTGGGCCGCCATGTTATGGTAGAGTTGTGGGTAATGTATATGGGAGTTGGTATCCTATGGGAGGAGTGTATAGTGGAACTGGATATGGGGCTCCTCCATTTATGCATAGGGGAGTTCTGTTCAATCCTAGGATGATGGGTACAAGGATGTGGCAACTACCTTATGGAAGTGCTCCAATTCATCATGCATACTGGAATTCTGGGATTGGGTATTTAGGTACTGTGGTTGATAATACAGTGGTCGGAAATGTGCCGAGTTAA 972 43.0 MKSDQSKLFVGGISRETSEDALEEHFEAYGSVSGSIVARDRCTKNSRGFGFVWFCDRSSADRALQDKHIILGRTVEVKKAVPRTEHVPNQQRSSRGSSMSGRNEFNNYQNSTKKIFVGGLSASLTEDEFRNYFEKYGRISDLVVMHDSVTQRPRGFGFITFDSEEAVENVMKKSFHELSGGFVEVKRAIPKEVKNITGYNNSTEGVKDVRAYVDNNAVQIPGHYPLMGPSFGSVPLHGGPPCYGRVVGNVYGSWYPMGGVYSGTGYGAPPFMHRGVLFNPRMMGTRMWQLPYGSAPIHHAYWNSGIGYLGTVVDNTVVGNVPS 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9666753 9668290 - Conep07aG0135700.1 Cone7ag1318 441914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1318 323 SUPERFAMILY RNA-binding domain, RBD 112 200 IPR035979 GO:0003676(InterPro)
Cone7ag1318 323 MobiDBLite consensus disorder prediction 86 104 - -
Cone7ag1318 323 FunFam Heterogeneous nuclear ribonucleoprotein A2/B1 108 192 - -
Cone7ag1318 323 Gene3D - 111 201 IPR012677 -
Cone7ag1318 323 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723(InterPro)
Cone7ag1318 323 SUPERFAMILY RNA-binding domain, RBD 4 107 IPR035979 GO:0003676(InterPro)
Cone7ag1318 323 Gene3D - 1 110 IPR012677 -
Cone7ag1318 323 Pfam RNA recognition motif 115 172 IPR000504 GO:0003723(InterPro)
Cone7ag1318 323 Pfam RNA recognition motif 8 75 IPR000504 GO:0003723(InterPro)
Cone7ag1318 323 MobiDBLite consensus disorder prediction 81 104 - -
Cone7ag1318 323 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 3 265 - GO:0003729(PANTHER)|GO:0006417(PANTHER)
Cone7ag1318 323 SMART rrm1_1 7 78 IPR000504 GO:0003723(InterPro)
Cone7ag1318 323 SMART rrm1_1 114 186 IPR000504 GO:0003723(InterPro)
Cone7ag1318 323 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1318 K14411 - - rcu:8265253 276.174
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1318 Cone-Chr7:9666753 Cone9ag0029 Cone-Chr9:139349 2.63E-56 dispersed
Cone7ag1318 Cone-Chr7:9666753 Cone11ag0805 Cone-Chr11:6526040 1.84E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g611 Blo01g01487 Blo12g00997 . Bda03g00161 . Bpe04g00143 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1318 . . Lsi04g01457 Csa04g02503 . . . . . . . . . Bma05g00060 . . . . . . . . Cpe02g00237 . . . . . . . . . . . . . . . . Chy07g00210 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010408 1 1 2 0 2 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 1 0 1 2 1 2 1 32