Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1324 ATGCCGATGTACTACCAGCCCTCTAAATCCAACCAACTGGGTGTGGGCGACGGAGGGCACGTTTTAGATGTAGAAACTGCCGTAAAAGATGGTATTCTGGGCGGTGGATTCTCTGCATTCTGCAGCGTTACTGCTTCAGAGAAATTAGATCTGAAGGAAATGATCGAAGAGCTTGACTCTATTGACGTTCCCTCGGTGTTGATCTGCCCAATCTCGTTAGACCCAATGAGAGACCCTGTTACCCTCTGCACCGGCCAAACTTATGATCGAACCAACATCCTTAAATGGTTCTCTCTAGGCCATTTCACTTGCCCCACTACAATGCAAGAACTATGGGACGATTCTATCACACCTAACAAAACACTCCAACAGCTGATTCACACTTGGTTTTCTCAGAAGTACTTGGCGATGAAGAAGCGGTCCGAGGATGTTCAGGGAAGGGTTTTAGATCTTTTGGACTCTCTAAAGAAGGTTAAAGGTCAAGCTAGAGTCCAAGCTCTGAAAGAGCTTAGGCAAGTAGTCTTCGCCCATTCTTCGGCCAAGAAAACTGCAGCTGAAGGTGGTGTTGTTGCTTTGATTTGTTCTCTGCTCGGTCCCTTCACATCCCATGCTGTTGGGTCGGAAGCAATTGGGATTTTGGTTAATTTAGATCTCGATTTGGACTCTAAGAAGAACCTTACTCAACCCGCTAAGATATCTCTAATGGTGGATATGTTGAATGAAGGATCTATAGAGACAAAGATCAATTGCACGAAATTGATCGACGTTTTGATCGAAGGAGAGGAATCTGGGGCTGAAAATATGTCAAGCTTGAGTCTTTTGGTTGGGTTGTTGAGATTAATTAAAGACAAAAGATACCCAAATGGAGTCCTAGCAGGACTAAGATTGCTCAAGACAATTTCTTCAACTGAATTAAGTCATAATTCGATTGTCAGCATCGGGGCAATTCCACAATTAGTTGAACTGATGCCGAATTTGGATTGTGAATGCTTGGAATTAGCACTTCATGTTCTAGAAGTAGTATCATCGGTTCCAGAGGGAAGATTGGGTTTGAAAGATTGTTCTAATACGATACCCGTATTAGTCAAATTGTTGATGAGAGTTTCGGAAAATTGTACTCAGCTTGCACTGTCGATTTTATGTGCAGTTTGTAAACTTGCTCCTGAAGAATGTGCTCCCGTTGCGGTAGAGGTTGGACTAGCCGCAAAACTTTTGCTTGTGATTCAAAGCGGGTGCAATCCGGTTTTGAAGCAGAGATCAGCCGAGCTCTTGAAACTGTGTAGCCAGAATTACAAGGCTAATAACTTCATTTCCAAGTGTAAGCTTACAAGAACGATGCAATAA 1344 43.23 MPMYYQPSKSNQLGVGDGGHVLDVETAVKDGILGGGFSAFCSVTASEKLDLKEMIEELDSIDVPSVLICPISLDPMRDPVTLCTGQTYDRTNILKWFSLGHFTCPTTMQELWDDSITPNKTLQQLIHTWFSQKYLAMKKRSEDVQGRVLDLLDSLKKVKGQARVQALKELRQVVFAHSSAKKTAAEGGVVALICSLLGPFTSHAVGSEAIGILVNLDLDLDSKKNLTQPAKISLMVDMLNEGSIETKINCTKLIDVLIEGEESGAENMSSLSLLVGLLRLIKDKRYPNGVLAGLRLLKTISSTELSHNSIVSIGAIPQLVELMPNLDCECLELALHVLEVVSSVPEGRLGLKDCSNTIPVLVKLLMRVSENCTQLALSILCAVCKLAPEECAPVAVEVGLAAKLLLVIQSGCNPVLKQRSAELLKLCSQNYKANNFISKCKLTRTMQ 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9687474 9689254 - Conep07aG0136300.1 Cone7ag1324 441920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1324 447 ProSiteProfiles U-box domain profile. 62 136 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone7ag1324 447 CDD RING-Ubox_PUB 64 114 IPR045210 -
Cone7ag1324 447 SMART Ubox_2 66 129 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone7ag1324 447 SUPERFAMILY ARM repeat 151 268 IPR016024 -
Cone7ag1324 447 Gene3D - 136 446 IPR011989 -
Cone7ag1324 447 SUPERFAMILY ARM repeat 232 432 IPR016024 -
Cone7ag1324 447 Pfam U-box domain 63 133 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone7ag1324 447 SUPERFAMILY RING/U-box 57 133 - -
Cone7ag1324 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 135 IPR013083 -
Cone7ag1324 447 PANTHER WDSAM1 PROTEIN 60 442 IPR045185 GO:0061630(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1295 Cone-Chr6:10383394 Cone7ag1324 Cone-Chr7:9687474 2.65E-33 dispersed
Cone7ag1324 Cone-Chr7:9687474 Cone8ag0034 Cone-Chr8:211847 6.89E-37 dispersed
Cone17ag0896 Cone-Chr17:7048897 Cone7ag1324 Cone-Chr7:9687474 2.91E-201 wgd
Cone20ag0239 Cone-Chr20:1039077 Cone7ag1324 Cone-Chr7:9687474 2.43E-207 wgd
Cone4ag1625 Cone-Chr4:12321853 Cone7ag1324 Cone-Chr7:9687474 1.26E-276 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1324 - - - 0.0