Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1325 ATGGAGGACGCTTACGCCAGATCTATTCCGGAGGTCTTGGATTTCTTCGGAGTGGACCCTTCGAAAGGTCTTACAGATGCTCAGGTTGCAGAGCATGCAAGAGACTATGGGAGAAATGTGCTACCTGAAGAGAAACGGCCTCCATTCTGGAAATTGGTTTCCAAGCAGTTTGATGATTTGCTTGTTAAGATACTAATCGCATCTGCCCTCGTTTCATTCATTTTGGCTTTGATTAATGGAGATACTGGGTTAACAGCATTTTTGGAGCCCTCGGTCATACTTATGATCTTGGCTGCAAATGCTACTGTAGGAGTGATCACTGAAACAAATGCTGAAAAGGCGCTCGAGGAGTTACGTGCTTATCAAGCTGATACTGCAACTGTTATGCGAAACGGTTGTTTCTCCATACTCCCAGCACCAGAGCTTGTTCCAGGTGATATTGTAGAAGTTTCTGTGGGTTGCAAAATTCCAGCTGATATGAGAATGATTGAGATCCTGAGTAATCAATTACGTGTTGATCAGGCAATTCTTACAGGTGAGAGCTGCTCTGTGGAAAAGGAGCTTGATTCCACCACAGCAACAAATGCTGTGTGCCAAGATAAAACAAATATTCTTTTCTCGGGTACTGTTGTGGTTGCTGGTAGGGCAAGAGCTGTTGTTTTTGGAGTGGGTACAAATACTGCCATGGGTAATATACATGATTCCATGTCACAAACTGAAGATGAAGCAACGCCATTGAAAAAGAAGTTAGATGAGTTTGGTACATTTTTGGCCAAGGTCATTGCTGGGATCTGTATACTGGTATGGGTAGTCAACATTGGTCACTTTCGTGACCCGGCTCATGGTGGGTTCTTGCGTGGTGCAATTCATTACTTCAAGATTGCAGTTGCTCTTGCTGTTGCAGCAATTCCTGAAGGACTTCCTGCTGTTGTCACTACGTGTTTGGCTCTTGGAACCAAGCGGATGGCTCGGTTGAATGCTATTGTACGGTCTTTGCCATCTGTTGAGACATTGGGCTGCACTACTGTAATATGCAGTGACAAAACTGGAACTTTGACAACTAATATGATGTCTGCCTCGAAGGTTTGTGTGGTTAATTCTGGGCAGCATGGTCCTGTTATTTCCGAGTACAGCATCAGTGGGACGACTTATGCTCCGGAGGGCATTATATATGATAGCACAGGGGTGCAGCTCGAATTTCCAGCTCAGTTTCCTTGTCTTCTTCACATAGCAATGTGTTCTGCCCTGTGCAATGAGTCTGTGTTGCAATATAATCCAGACAAGGGGAAATATGAAAAAATTGGTGAATCAACTGAAGTAGCTCTACGGGTTCTTGCAGAAAAGGTTGGTCTTCCTGGTTTTGACTCCATGCCTTCAGCCCTTAATATGCTAAGTAAGCATGTGCGTGCTTCTTATTGTAACCACTATTGGGAGAACCAATTCAAAAAGATTTCTGTACTGGATTTTACTCGAGATCGCAAGATGATGAGTGTACTATGTAGCAGAAATCAGTCACCAATTTTGTTTTCAAAAGGTGCTCCAGAGAGTATACTTTCTAGATGCACAAATATAATGTACAATGATGATGGCTCCACTGTTCCTCTAACACCTAGTATTCGAGCTGAGCTGGAGTTAAGGTTTCACAGTTTTGCAGGAAAAGAAACATTGAGATGCTTGGCTCTAGCTTTGAAATGGATACCTGTGGGTCAGCAGAGTTTCTCCATTGATGATGAGAAAGACCTCACTTTCATTGGGTTGGTCGGAATGCTTGATCCACCAAGAGAGGAAGTAAGAAATGCTATGGTTTCATGCATAACTGCTGGAATACGTGTCATAGTTGTCACGGGGGATAACAAGGCAACAGCTGAATCGCTTTGCCACAAGATAGGTGCTTTTGATCATTTCGGAGATCTTGTTGGACGTTCTTACACTGCTTATGAGTTCGAAGAGTTGCCTGCTTTGCAGCAAACACTAGCCTTGCAACGTATGGCACTCTTTACCAGGGTTGAACCTTCTCACAAGAGAATGCTGGTTGAGGCCTTACAACATCAGAATGAAGTGGTTGCAATGACTGGTGATGGTGTGAATGATGCACCTGCACTTAAGAAGGCAGATATAGGCATCGCCATGGGTTCGGGAACAGCAGTGGCAAAGAGTGCTTCAGATATGGTTTTGGCTGATGATAATTTTGCTACAATTGTCTCGGCTGTCGCAGAGGGAAGGGCTATATATAATAACACAAAGCAATTTATCAGATACATGATCTCTTCAAATATTGGTGAAGTTGTTTGTATCTTTGTGTCAGCAGCACTTGGAATACCAGATACTCTTGCGCCAGTCCAGCTGCTATGGGTCAATCTAGTTACTGATGGCTTGCCTGCCACTGCCATTGGATTTAATAAGCAAGACTCTGATGTGATGAAAGTTAAACCTCGTAAGGTGAGTGAAGCGGTTATCACTGGCTGGCTGTTCTTCCGTTATTTGGTAATTGGAGCTTATGTTGGCATTGCCACTGTTTCTGGATTTATTTGGTGGTTTCTCTACTCTGATAGTGGTCCTAAACTACCATACGGAGAATTAATGAATTTTGATACTTGCTCCACAAGGGAGACAGCTTATCCATGCAGTGTATTTGATGACCGGCATCCTTCAACTTTGGCAATGACTGTTCTCGTTGTCATTGAGATGTTCAATGCTTTAAATAATCTTAGCGAAAATCAATCCCTTCTTGTCATTCCTCCCTGGAGCAACCTATGGCTCGTCGCATCAATTATCTTAACTATGATCCTTCACGCGCTTATTTTGTATGTGCATCCACTTTCCATTCTTTTCTCTGTAACACCATTATCTTGGGCCGAGTGGAAGGTTGTCCTGTACCTCTCATTTCCGATTATAATCATTGATGAGGTGCTGAAGTTCTTCTCAAGAAATCGGAATGGTGCGCGGCTTAATTTCAGATTCCGGAGGCACCTTATTCTTCCGAAAAAGGAAACACGTCAAAAGTAA 3006 43.28 MEDAYARSIPEVLDFFGVDPSKGLTDAQVAEHARDYGRNVLPEEKRPPFWKLVSKQFDDLLVKILIASALVSFILALINGDTGLTAFLEPSVILMILAANATVGVITETNAEKALEELRAYQADTATVMRNGCFSILPAPELVPGDIVEVSVGCKIPADMRMIEILSNQLRVDQAILTGESCSVEKELDSTTATNAVCQDKTNILFSGTVVVAGRARAVVFGVGTNTAMGNIHDSMSQTEDEATPLKKKLDEFGTFLAKVIAGICILVWVVNIGHFRDPAHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSASKVCVVNSGQHGPVISEYSISGTTYAPEGIIYDSTGVQLEFPAQFPCLLHIAMCSALCNESVLQYNPDKGKYEKIGESTEVALRVLAEKVGLPGFDSMPSALNMLSKHVRASYCNHYWENQFKKISVLDFTRDRKMMSVLCSRNQSPILFSKGAPESILSRCTNIMYNDDGSTVPLTPSIRAELELRFHSFAGKETLRCLALALKWIPVGQQSFSIDDEKDLTFIGLVGMLDPPREEVRNAMVSCITAGIRVIVVTGDNKATAESLCHKIGAFDHFGDLVGRSYTAYEFEELPALQQTLALQRMALFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFATIVSAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVSAALGIPDTLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKVKPRKVSEAVITGWLFFRYLVIGAYVGIATVSGFIWWFLYSDSGPKLPYGELMNFDTCSTRETAYPCSVFDDRHPSTLAMTVLVVIEMFNALNNLSENQSLLVIPPWSNLWLVASIILTMILHALILYVHPLSILFSVTPLSWAEWKVVLYLSFPIIIIDEVLKFFSRNRNGARLNFRFRRHLILPKKETRQK 1001
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 9695965 9709118 - Conep07aG0136500.1 Cone7ag1325 441921
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1325 1001 CDD P-type_ATPase_SERCA 5 976 - -
Cone7ag1325 1001 NCBIfam HAD-IC family P-type ATPase 662 774 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone7ag1325 1001 NCBIfam HAD-IC family P-type ATPase 231 371 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone7ag1325 1001 Pfam E1-E2 ATPase 122 324 - -
Cone7ag1325 1001 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 686 980 - -
Cone7ag1325 1001 ProSitePatterns E1-E2 ATPases phosphorylation site. 347 353 IPR018303 -
Cone7ag1325 1001 FunFam Calcium-transporting ATPase, putative 214 341 - -
Cone7ag1325 1001 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 978 IPR023298 -
Cone7ag1325 1001 Pfam Cation transport ATPase (P-type) 415 524 - -
Cone7ag1325 1001 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 352 589 IPR023299 GO:0000166(InterPro)
Cone7ag1325 1001 Gene3D - 355 592 IPR023299 GO:0000166(InterPro)
Cone7ag1325 1001 PRINTS P-type cation-transporting ATPase superfamily signature 345 359 - -
Cone7ag1325 1001 PRINTS P-type cation-transporting ATPase superfamily signature 585 596 - -
Cone7ag1325 1001 PRINTS P-type cation-transporting ATPase superfamily signature 173 187 - -
Cone7ag1325 1001 PRINTS P-type cation-transporting ATPase superfamily signature 691 710 - -
Cone7ag1325 1001 PRINTS P-type cation-transporting ATPase superfamily signature 714 726 - -
Cone7ag1325 1001 PRINTS P-type cation-transporting ATPase superfamily signature 607 617 - -
Cone7ag1325 1001 Gene3D - 55 976 - -
Cone7ag1325 1001 SFLD Haloacid Dehalogenase 326 743 - -
Cone7ag1325 1001 SUPERFAMILY Calcium ATPase, transduction domain A 124 235 IPR008250 -
Cone7ag1325 1001 FunFam Sodium/potassium-transporting ATPase subunit alpha 584 730 - -
Cone7ag1325 1001 FunFam Calcium-transporting ATPase 112 237 - -
Cone7ag1325 1001 Pfam Cation transporting ATPase, C-terminus 776 974 IPR006068 -
Cone7ag1325 1001 Pfam haloacid dehalogenase-like hydrolase 582 705 - -
Cone7ag1325 1001 SUPERFAMILY HAD-like 578 739 IPR036412 -
Cone7ag1325 1001 SFLD p-type atpase 326 743 IPR044492 -
Cone7ag1325 1001 Gene3D - 342 735 IPR023214 -
Cone7ag1325 1001 PRINTS H+-transporting ATPase (proton pump) signature 663 679 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone7ag1325 1001 PRINTS H+-transporting ATPase (proton pump) signature 722 747 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone7ag1325 1001 PRINTS H+-transporting ATPase (proton pump) signature 691 707 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone7ag1325 1001 Gene3D - 22 237 - -
Cone7ag1325 1001 NCBIfam calcium-translocating P-type ATPase, SERCA-type 53 845 IPR005782 GO:0005388(InterPro)|GO:0006816(InterPro)|GO:0016020(InterPro)
Cone7ag1325 1001 FunFam Calcium-transporting ATPase 355 592 - -
Cone7ag1325 1001 SMART Cation_ATPase_N_a_2 3 77 IPR004014 -
Cone7ag1325 1001 Pfam Cation transporter/ATPase, N-terminus 5 72 IPR004014 -
Cone7ag1325 1001 PANTHER CALCIUM-TRANSPORTING ATPASE 8 979 - GO:0005388(PANTHER)|GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0070588(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0443 Cone-Chr14:2069229 Cone7ag1325 Cone-Chr7:9695965 5.62E-261 dispersed
Cone18ag0318 Cone-Chr18:1574066 Cone7ag1325 Cone-Chr7:9695965 9.06E-261 dispersed
Cone1ag0679 Cone-Chr1:6365823 Cone7ag1325 Cone-Chr7:9695965 7.20E-155 dispersed
Cone7ag1325 Cone-Chr7:9695965 Cone7ag1339 Cone-Chr7:9747578 2.17E-82 dispersed
Cone6ag1463 Cone-Chr6:11673578 Cone7ag1325 Cone-Chr7:9695965 2.75E-81 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1325 K05853 - mdm:103455877 1748.41