Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone7ag1346 | ATGAGCGGCCAATCTCGATTGCATGAACCTAAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGCGAACCGTCTCTTACGATCTCAATCGGCGTCTAAGCCGGCGTCTCCCTCATCGGACGACGAGGACGAAGTTGCATTTGAGGATAGAGAGAAGATTGCGATAGTCGATGTGGATTCAGTCGACGAGGTGGATTCCACGTCGGTACCGCCGTTCTCGTGGAAAAAGCTGTGGTTGTTCACTGGCCCTGGGTTTTTGATGAGCATAGCGTTCCTGGATCCTGGGAATCTGGAAGGAGATCTTCAAGCAGGAGCTATTGCAGGCTATTCGCTGCTATGGCTACTGATGTGGGCCACGTTTATGGGCCTGCTGATTCAGCTGTTGTCGGCGAGGGTTGGGGTGGCGACTGGCCGCCATTTGGCTGAGCTCTGTCGGGATGAGTATCCGAATTGGGCTAGATTGTTGTTGTGGTTCATGGCGGAGCTGGCCTTGATTGGTGCTGATATTCAGGAGGTCATTGGAAGTGCAATTGCTATCCAAATTCTGAGTCATGGAGTCGTACCACTTTGGGCTGGAGTCATTATCACGGCGTCGGATTGTTTCATTTTCTTATTTCTTGAGAACTATGGAGTGAGGAAGCTAGAAGCTGTATTTGCTGTCCTTATTGCAACTATGGCTTTATCTTTCGCCTGGATGTTTGGTGACACAAAGCCCAATGGGAAAGAACTTTTAATGGGTATTTTGATTCCAAAGCTGAGCTCAAAAACAATCAGGCAAGCAGTAGGAGTTGTGGGTTGTGTCATTATGCCTCACAATGTATTTTTGCACTCTGCTTTGGTGCAATCGAGGAACATCGATCCCCACAAAAAAGGACGAGTTCAGGAGGCTATCAATTATTACTCCATTGAAGCATCAATAGCACTTCTAATCTCTTTCATTATAAATCTGTTTGTGACAACTGTATTTGCTAAGGGATTTTATGGCACTAAAATAGGCAATAGTATGGGTTTGATAAATGCTGGGCAGTACCTACAGGAGAAATATGGGGGAGGAGGATTTCCAATTCTGTATATCTGGGGCATTGGCTTGTTAGCAGCTGGACAGAGTAGCACAATAACTGGAACATATGCCGGACAGTTTATCATGGGAGGTTTTCTCAACCTTCGTTTGAAAAAATGGTTGAGGGCAGTGATCACAAGGACTTTTGCTATTGCACCAACTATGATTGTAGCTCTTGTATTCAATACCTCTGAGTCTTCATTGGATGTGTTGAATGAGTGGCTTAATGTGCTTCAGTCAATGCAAATTCCTTTTGCTCTTATTCCCCTTCTTACATTGGTGGCCAAGGAGCATGTCATGGGGGATTTTAAAATTGGGCCCATTCTTGAGAGGGTTGCCTGGACTGTTGCTGCACTGGTGATGGTGATTAATGGTTATCTTTTGATGGAATTCTTCGCATTTGAGGTTAAAGGAATGCTATTCGGTTCTCTAGTCTGCTTGGGCACATTAGCTTATACCGCATTTATTGCATATCTTATCTCACATAGGACCGCTCTTAGTCTTCCTTCCATTTGGCTGACTTTGCTGTCAAAACGTCTCGGCTACTCTGGCAACTGTTGA | 1623 | 45.78 | MSGQSRLHEPKGEEEEEEEEEEANRLLRSQSASKPASPSSDDEDEVAFEDREKIAIVDVDSVDEVDSTSVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATFMGLLIQLLSARVGVATGRHLAELCRDEYPNWARLLLWFMAELALIGADIQEVIGSAIAIQILSHGVVPLWAGVIITASDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGDTKPNGKELLMGILIPKLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRNIDPHKKGRVQEAINYYSIEASIALLISFIINLFVTTVFAKGFYGTKIGNSMGLINAGQYLQEKYGGGGFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRAVITRTFAIAPTMIVALVFNTSESSLDVLNEWLNVLQSMQIPFALIPLLTLVAKEHVMGDFKIGPILERVAWTVAALVMVINGYLLMEFFAFEVKGMLFGSLVCLGTLAYTAFIAYLISHRTALSLPSIWLTLLSKRLGYSGNC | 540 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 9794788 | 9798721 | - | Conep07aG0138700.1 | Cone7ag1346 | 441942 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone7ag1346 | 540 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
| Cone7ag1346 | 540 | Pfam | Natural resistance-associated macrophage protein-like | 99 | 460 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone7ag1346 | 540 | NCBIfam | metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family | 76 | 454 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone7ag1346 | 540 | PRINTS | Natural resistance-associated macrophage protein signature | 157 | 183 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone7ag1346 | 540 | PRINTS | Natural resistance-associated macrophage protein signature | 212 | 233 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone7ag1346 | 540 | PRINTS | Natural resistance-associated macrophage protein signature | 368 | 387 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone7ag1346 | 540 | PRINTS | Natural resistance-associated macrophage protein signature | 396 | 413 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone7ag1346 | 540 | PRINTS | Natural resistance-associated macrophage protein signature | 187 | 206 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone7ag1346 | 540 | PRINTS | Natural resistance-associated macrophage protein signature | 261 | 284 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone7ag1346 | 540 | PRINTS | Natural resistance-associated macrophage protein signature | 430 | 449 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone7ag1346 | 540 | PANTHER | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER | 49 | 517 | IPR001046 | GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone7ag1346 | 540 | Hamap | Divalent metal cation transporter MntH [mntH]. | 64 | 486 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone7ag1346 | 540 | NCBIfam | Nramp family divalent metal transporter | 83 | 451 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone12ag0154 | Cone-Chr12:785958 | Cone7ag1346 | Cone-Chr7:9794788 | 2.86E-271 | wgd | |
| Cone4ag1604 | Cone-Chr4:12204799 | Cone7ag1346 | Cone-Chr7:9794788 | 0 | wgd | |
| Cone6ag1430 | Cone-Chr6:11472817 | Cone7ag1346 | Cone-Chr7:9794788 | 3.32E-259 | wgd | |
| Cone7ag1346 | Cone-Chr7:9794788 | Cone9ag1360 | Cone-Chr9:10187459 | 1.93E-256 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone7ag1346 | K21398 | - | vvi:100262579 | 827.78 |