Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1347 ATGCACAGGGTGGGAATCTACAGACGGCCAGCGATGTGGACGGTTCAAAGGCATTCTCATCAGCCATGGCAGCCATGGGCCCGTCTTCTAGCTACTCTTACCCTTTGGATTTGTGTTTTGATCAGTCTTCGGTTCGGGTACTATGGCAATTCCCAGATGGTGCTTGGACCAAGTTCTTCAAGATTGATAGAAGCAAACTCTGTGTTTGTAGAGAAGATTCATGCAAGAGAAGATGGCAATAAAGTTGTTCATCTCTATGCGTTCGATCAAATGCCTCAACTAAGCTACGATGCAAATTGGACCACGTCCAACTACTTGATTGTTGCATCATATCATAGAAAGGAATTTTCCTTGTGGCTAAACAAGGGTTCAAAAATTCGAATGAGGTGGGAAACTCAGACTAGTATATTGAAACAGCTTGAAGTTGCTATGATTAAAGGGGAGAAAAGTCGTGAAACATTGATGCCAACATTGACAGGTTCCCCTGATTCACTCTCACAAAACGAGCCAGTTAACGGTAAGGAAGCTGAATACACCATTGTGGAAGATGACAAGTACAATATAATGGTCCTAAATGGAAATGCAAGAAGTATAATAATGAAAATTAATATTAACGTTTCATCAAAGATATATGATATTAGTAAAGCTAAAAGCATGTGTTCTACTGCAAAGGATTCTTGTAGCCTCAGCATTCAATTTCCGGGTACTCAATATGTTGTAGTAACAACTCCGAACAATGGGGATCTCAGCGAATGGAACATAGAGGTCTCTTACGTTGCTCGAGCCGGAACATACATTGCAGTTTTAGCATTTATTATGATTACAATCTTCGTGATTCTGAAGTATCTAGGAGCATGTGAAAATGAGGGTAATGTAGAAGAGAGAGAGACAATGGATGTAATTACCGAGACTGATCCATTAATTTCAAATAAGCCGATCCATGTTACGTATGGTACGAGGGAAGAGGATGAAGATTCAGGAGCATCTAGTAGCTCTTCGGATCAAGAGTTATATGATGAAAAGCTTTGTGTGATCTGCTATGACGAACAGAGAAATTCCTTCTTTGTTCCTTGTGGTCACTGTGCAACTTGCTATGACTGTGCTCAAAGGATTATGGAAGGGGATAACAAGGTTTGTCCAATATGTCGCAGGCTGATGCACAAAGTAAGAAGACTGTTTAACTTTTGA 1188 40.4 MHRVGIYRRPAMWTVQRHSHQPWQPWARLLATLTLWICVLISLRFGYYGNSQMVLGPSSSRLIEANSVFVEKIHAREDGNKVVHLYAFDQMPQLSYDANWTTSNYLIVASYHRKEFSLWLNKGSKIRMRWETQTSILKQLEVAMIKGEKSRETLMPTLTGSPDSLSQNEPVNGKEAEYTIVEDDKYNIMVLNGNARSIIMKININVSSKIYDISKAKSMCSTAKDSCSLSIQFPGTQYVVVTTPNNGDLSEWNIEVSYVARAGTYIAVLAFIMITIFVILKYLGACENEGNVEERETMDVITETDPLISNKPIHVTYGTREEDEDSGASSSSSDQELYDEKLCVICYDEQRNSFFVPCGHCATCYDCAQRIMEGDNKVCPICRRLMHKVRRLFNF 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9803405 9805431 - Conep07aG0138800.1 Cone7ag1347 441943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1347 395 Pfam E3 ubiquitin-protein ligase APD1-4, middle domain 176 278 IPR032010 -
Cone7ag1347 395 Pfam E3 ubiquitin-protein ligase APD1-4, N-terminal 84 150 IPR032008 -
Cone7ag1347 395 Pfam Zinc finger, C3HC4 type (RING finger) 340 388 - -
Cone7ag1347 395 ProSiteProfiles Zinc finger RING-type profile. 343 383 IPR001841 -
Cone7ag1347 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 394 IPR013083 -
Cone7ag1347 395 PANTHER OS05G0521000 PROTEIN 30 393 - GO:0007049(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cone7ag1347 395 SMART ring_2 343 382 IPR001841 -
Cone7ag1347 395 SUPERFAMILY RING/U-box 335 389 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1347 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0153 Cone-Chr12:781533 Cone7ag1347 Cone-Chr7:9803405 5.70E-35 wgd
Cone17ag0871 Cone-Chr17:6906433 Cone7ag1347 Cone-Chr7:9803405 1.87E-134 wgd
Cone20ag0218 Cone-Chr20:934045 Cone7ag1347 Cone-Chr7:9803405 1.73E-145 wgd
Cone4ag1603 Cone-Chr4:12201736 Cone7ag1347 Cone-Chr7:9803405 1.40E-217 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g688 . Blo12g00977 . Bda03g00193 . . Bma04g00146 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1603 Cone7ag1347 . Cone20ag0218 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015386 2 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 2 12