Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1349 ATGAAGAGGTCTCCTACCGGTGGCGACTATTCCGACAGGAAGATGAAGAAGAAGATGAAAGCAGAGGAAGAGGTAGGAGCAGAGACTGGAGGGAATCAGTTTCTGCATCTGGATGATAATCTTCTGTTCGAGGTGTTGAAGCACGTGGACGCGAGGACGCTTGCCATGGCGGCGTGCGTGAGCAAGCAGTGGCACAAGACGGCGGAGGACGAGCGGCTTTGGGAGCTGATGTGCACCCGACATTGGACCAACGTCGGTTGCGGCAACCAACAGTTACGATCTGTCGTGTTAGCGCTTGGCGGGTTCCGACGCCTCCACTCTCTCTTCATCTGGCCGCTATGTAAACCTCAGTTGTCTAGCTCTTCCTCTGCTTCGTCATCATCTTCCGCACCGGCGGTGGCTTCTTCGCCGACGAAGGCTTTGGCACCTTTCGCGCCGGCGAGGGGGTCTAAGCAGCAGCCGACGCGATGGGGGAAAGACGAGGACAAAAGTGCAGTGTCCGGTGACAAGCTTGTGCACATACAAATTCCCGCCACACTCAAGAAACAACTAGTTGATGATTGTGAGTTTGTTACTCATCTTGGGAAGCTTATAAAGCTCCCACGTAATCTCAATGTAGACAACATATTGAAGAAGTTCAAGAAAGATGGCGTGAAGGATGATTCAGTTGGAGAAGTAGTGAAGGGATTGAGTTGTTACTTCAACAATGCATTACTGGTCATACTCCTTTACAAAGTTAGATTGCCCGAGTTATTGTTCTACGCCAACATCGATGAAGAGACCTTAACGGACCTGCAGCAGAAGTTCTCTCACTTTCTCAATGAGTTGTATTGA 834 50.48 MKRSPTGGDYSDRKMKKKMKAEEEVGAETGGNQFLHLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELMCTRHWTNVGCGNQQLRSVVLALGGFRRLHSLFIWPLCKPQLSSSSSASSSSSAPAVASSPTKALAPFAPARGSKQQPTRWGKDEDKSAVSGDKLVHIQIPATLKKQLVDDCEFVTHLGKLIKLPRNLNVDNILKKFKKDGVKDDSVGEVVKGLSCYFNNALLVILLYKVRLPELLFYANIDEETLTDLQQKFSHFLNELY 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9813603 9817566 + Conep07aG0139000.1 Cone7ag1349 441945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1349 277 FunFam F-box protein GID2 22 130 - -
Cone7ag1349 277 PANTHER F-BOX PROTEIN SNE 15 118 IPR044184 GO:0009740(PANTHER)|GO:0009937(InterPro)|GO:0019005(InterPro)|GO:0019005(PANTHER)
Cone7ag1349 277 SUPERFAMILY F-box domain 25 85 IPR036047 GO:0005515(InterPro)
Cone7ag1349 277 Pfam MRG 161 245 IPR026541 -
Cone7ag1349 277 Gene3D MRG domain 170 247 IPR038217 -
Cone7ag1349 277 Gene3D - 21 112 - -
Cone7ag1349 277 ProSiteProfiles MRG domain profile. 168 277 - -
Cone7ag1349 277 CDD F-box_AtGID2-like 37 78 - -
Cone7ag1349 277 SMART fbox_2 37 77 IPR001810 GO:0005515(InterPro)
Cone7ag1349 277 MobiDBLite consensus disorder prediction 1 23 - -
Cone7ag1349 277 ProSiteProfiles F-box domain profile. 31 77 IPR001810 GO:0005515(InterPro)
Cone7ag1349 277 Pfam F-box domain 34 75 IPR001810 GO:0005515(InterPro)
Cone7ag1349 277 MobiDBLite consensus disorder prediction 143 164 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1349 K14495 - - csv:101219720 196.052
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1601 Cone-Chr4:12192919 Cone7ag1349 Cone-Chr7:9813603 2.07E-89 dispersed
Cone17ag0867 Cone-Chr17:6875775 Cone7ag1349 Cone-Chr7:9813603 3.23E-56 wgd
Cone20ag0214 Cone-Chr20:919232 Cone7ag1349 Cone-Chr7:9813603 1.02E-52 wgd
Cone4ag1600 Cone-Chr4:12186832 Cone7ag1349 Cone-Chr7:9813603 1.30E-39 wgd
Cone6ag1424 Cone-Chr6:11424028 Cone7ag1349 Cone-Chr7:9813603 1.79E-28 wgd
Cone7ag1349 Cone-Chr7:9813603 Cone9ag1352 Cone-Chr9:10133978 7.16E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g701 . . . . . . Bma04g00149 . . . . Cma09g00262 . . . Cpe06g00181 . . . . . . . . . . . . . . . Cone4ag1600 Cone7ag1349 . . Lsi04g01515 Csa04g02449 . . . . . . . . . . . . Cmo09g00256 . . . Car09g00220 . . Bhi09g03270 . . . . . . Cla05g02080 Cam05g2231 Cec05g2250 Cco05g2291 Clacu05g2225 Cmu05g2091 Cre05g2216 . . Chy07g00165 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002530 1 1 3 1 3 2 2 2 2 1 2 2 3 2 2 2 2 4 3 2 2 2 2 2 2 2 2 2 2 0 60