Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1354 ATGGCTGTTGAGCTTCTGGTGGGTTTCAGAGGAGATCGTTTCGCCCCGAACATGGAAGAAAACGCCGGCGTCGCCGCTTTACAAGAAGCTGCATCCGCCGGAATAAAGAGCGCCGAGAATTTTCTCCAATTGATGTCTACGAATCCAAATTATCCATGCAAAGAGTCCTCTTCGACTTCAAGCTCTAATGCAGAATGTAACGCCGTTGCAGATGCGGTTGTCAACAAGTTCAGAAAGGTTATTTCTTTACTGGACCGGGATCGGACAGGCCATGCGCGGTTCAGAAAAGCTCCTGTTGCACCTCCGCCGCAACAAGATCTAACCCCAAAGCCGTTTGTTACAGCTTTCGTTCCGAAGCCTGAACCGCAAAAAGTTTCAGCTTTTAAGGTTTACTGTCCGACGCCGGTAGTACGTTTACCTCCTCTGCCTCAAAATCATAGCCAGATCCATAACAGCTCTGCTCAAGCAGTGCCTAAAATGGGCCTTGTAGAGAAAGAGGAGCCTACTACGACAATCACCTTCTCAACTTCGGCACCAATATCCGCCGCGAATTCCTACATCACATCGTTAACTGGAAATTCCGACAGTATGCAACCGTCGTTGTCATCGGGGTTTCAAATTACACATATGTCCCAGGATTCATCTGCAGGTAAGCCTCCTCCGTCCACATCGTCCCTTAAGAGGAAGTGCAGCTCCATGGATCATGGGTCGGGTTTGAAATGTGCTACATCTTCGGGAAGATGCCACTGCTCTAAGAAGAGGAAAAACAGAATAAAGAGAGTGACGAGAGTGCCTGCAATTAGCTTGAAAATGGCGGATATTCCACCCGACGATTATTCCTGGAGAAAGTATGGACAGAAACCCATCAAAGGCTCCCCTCATCCAAGGGGATATTACAAGTGTAGCAGCGTGAGGGGTTGTCCAGCCCGGAAACATGTGGAGCGTGCCTTAGACGATCCTGCCATGCTCATTGTAACTTACGAAAACGATCATAATCACGCTGCTCACTCCATCACGGAAGCAGCGACGGCTGATCCGGTGCTAGAACCGTCTTAA 1056 49.05 MAVELLVGFRGDRFAPNMEENAGVAALQEAASAGIKSAENFLQLMSTNPNYPCKESSSTSSSNAECNAVADAVVNKFRKVISLLDRDRTGHARFRKAPVAPPPQQDLTPKPFVTAFVPKPEPQKVSAFKVYCPTPVVRLPPLPQNHSQIHNSSAQAVPKMGLVEKEEPTTTITFSTSAPISAANSYITSLTGNSDSMQPSLSSGFQITHMSQDSSAGKPPPSTSSLKRKCSSMDHGSGLKCATSSGRCHCSKKRKNRIKRVTRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPAMLIVTYENDHNHAAHSITEAATADPVLEPS 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9836188 9837830 + Conep07aG0139500.1 Cone7ag1354 441950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1354 351 Gene3D WRKY domain 261 335 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone7ag1354 351 SMART WRKY_cls 275 335 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone7ag1354 351 MobiDBLite consensus disorder prediction 209 231 - -
Cone7ag1354 351 ProSiteProfiles WRKY domain profile. 270 336 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone7ag1354 351 Pfam Plant zinc cluster domain 227 273 IPR018872 -
Cone7ag1354 351 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 26 338 IPR044810 GO:0003700(InterPro)
Cone7ag1354 351 Pfam WRKY DNA -binding domain 277 333 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone7ag1354 351 FunFam WRKY transcription factor 65 259 336 - -
Cone7ag1354 351 SUPERFAMILY WRKY DNA-binding domain 272 334 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1861 Cone-Chr4:13342698 Cone7ag1354 Cone-Chr7:9836188 3.24E-68 dispersed
Cone7ag1354 Cone-Chr7:9836188 Cone7ag1766 Cone-Chr7:11645922 5.67E-71 dispersed
Cone4ag1594 Cone-Chr4:12164332 Cone7ag1354 Cone-Chr7:9836188 7.26E-225 wgd
Cone6ag1414 Cone-Chr6:11365253 Cone7ag1354 Cone-Chr7:9836188 3.93E-99 wgd
Cone7ag1354 Cone-Chr7:9836188 Cone9ag1341 Cone-Chr9:10068119 3.56E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46550 PF02309 AUX_IAA 7.20E-76 CL0072 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1354 - - - 0.0