Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1357 ATGTCTGGAGGAATCGCGCGAGGTCGTCTTGCCGAGGAGCGGAAGGATCATCCTTATGTCCGTACTCCGTACTCTCTGTATCTCTCATCGTCTTCTTCTGTCTCGGGGTTTTGTGGCGAAGCCGGAGATGGATCTGTGAATTTGATGGTCTGGCGGTGTATTATCCCTGGAAAAGCTGGGACAGATTGGGAAGGTTTTTTCCAGTTCAACTCACCTTCAGCGAAGATTGAAGATTACCCTACTAAACCTCCCTTCTGCAAATTTTCGCAAGGTTTCCTCCACCCTAATGTCTATCCTTCTGGAGCCATATGCCTTACTATTCTCAGTGCAGACAAGTTAAGTACTTAA 348 47.41 MSGGIARGRLAEERKDHPYVRTPYSLYLSSSSSVSGFCGEAGDGSVNLMVWRCIIPGKAGTDWEGFFQFNSPSAKIEDYPTKPPFCKFSQGFLHPNVYPSGAICLTILSADKLST 115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9863756 9864355 + Conep07aG0139800.1 Cone7ag1357 441953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1357 115 Gene3D Ubiquitin Conjugating Enzyme 1 114 IPR016135 -
Cone7ag1357 115 SUPERFAMILY UBC-like 43 109 IPR016135 -
Cone7ag1357 115 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 93 108 IPR023313 -
Cone7ag1357 115 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 115 IPR000608 -
Cone7ag1357 115 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 5 109 IPR050113 GO:0005634(PANTHER)|GO:0016925(PANTHER)|GO:0061656(PANTHER)
Cone7ag1357 115 Pfam Ubiquitin-conjugating enzyme 46 111 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1357 K10577 - - mdm:103441097 124.405
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0141 Cone-Chr12:728939 Cone7ag1357 Cone-Chr7:9863756 1.57E-36 wgd
Cone6ag1409 Cone-Chr6:11328407 Cone7ag1357 Cone-Chr7:9863756 1.60E-34 wgd
Cone7ag1357 Cone-Chr7:9863756 Cone8ag0141 Cone-Chr8:742061 5.24E-35 wgd
Cone7ag1357 Cone-Chr7:9863756 Cone9ag1337 Cone-Chr9:10039064 4.56E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g732 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1357 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0054055 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1