Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1360 ATGGAAGGAGATCGGAAGCATACGAAGCAAGTACATAATCATAACGAAAAGCCATATCGAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTCGCTGAAATTAGAGAGCCCAACAAGCGGACTAGGATTTGGCTCGGCTCTTACACAACCCCTGTCGCCGCCGCTCGTGCTTATGACACCGCCGTCTTTTATCTTCGTGGACCCTCCGCCCGCCTCAACTTCCCGGAGCTTATCAATATGCAAGACCACCAGCTCCAGGACATGTCCACCGCTTCTATACGGAAAAGAGCAACTGAAGTCGGTGCTAGAGTGGATGCTCTGCTCCTCCAGACCAGGACGTCATCTGATCATGGATCCAACTCCAACCCCAATCAGGTCTCCTCCGTGGCAGCGGCGTTCAAACCGGATTTAAACGAGTACCCGGAAAACTCTGATGGGGATTAA 444 52.25 MEGDRKHTKQVHNHNEKPYRGIRMRKWGKWVAEIREPNKRTRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELINMQDHQLQDMSTASIRKRATEVGARVDALLLQTRTSSDHGSNSNPNQVSSVAAAFKPDLNEYPENSDGD 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9870629 9871423 + Conep07aG0140100.1 Cone7ag1360 441956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1360 147 CDD AP2 19 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1360 147 MobiDBLite consensus disorder prediction 112 147 - -
Cone7ag1360 147 MobiDBLite consensus disorder prediction 112 131 - -
Cone7ag1360 147 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1360 147 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1360 147 SMART rav1_2 18 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1360 147 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677(InterPro)
Cone7ag1360 147 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Cone7ag1360 147 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1360 147 Pfam AP2 domain 19 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1360 147 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1360 147 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 8 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1360 Cone-Chr7:9870629 Cone9ag0662 Cone-Chr9:3150302 3.41E-22 dispersed
Cone9ag0749 Cone-Chr9:3572793 Cone7ag1360 Cone-Chr7:9870629 1.06E-14 dispersed
Cone12ag0140 Cone-Chr12:726874 Cone7ag1360 Cone-Chr7:9870629 2.63E-48 wgd
Cone17ag0855 Cone-Chr17:6783221 Cone7ag1360 Cone-Chr7:9870629 1.49E-57 wgd
Cone20ag0201 Cone-Chr20:868165 Cone7ag1360 Cone-Chr7:9870629 2.99E-57 wgd
Cone4ag1590 Cone-Chr4:12138815 Cone7ag1360 Cone-Chr7:9870629 6.07E-92 wgd
Cone6ag1406 Cone-Chr6:11316885 Cone7ag1360 Cone-Chr7:9870629 1.07E-45 wgd
Cone7ag1360 Cone-Chr7:9870629 Cone8ag0140 Cone-Chr8:740221 6.49E-48 wgd
Cone7ag1360 Cone-Chr7:9870629 Cone9ag1335 Cone-Chr9:10025640 3.54E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46552 PF00125 Histone 5.60E-21 CL0012 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1360 K09286 - cit:102627433 189.889