Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1362 ATGGCGGATCTGTACGGAGCGCCACCTTCTTCTGACCCGGAAGACTTCTCTTCTTTCCTCAACCAACTCCTACACAACTCTTCATCATCGTCTACCTCTTCTCCCCTTTGCATGTCATTGAAGAGTAAGTACCCAAATTTGTTTAACTCTCAGTTGCTAGCGCAATCGCCGCCGCCGTTTTCCCAGAGACGGGAGTTTACAGCCGTTTTCTCAGAGGAGGATCGTGCCCGGTCTGCCGCCAGCTCTTCAGCCGTTACCAGCACCACCGCCTCGTTGTCCGGTGTGAATTTCTTGGATCCCGGCGGTTATATCCCGTCCGACGCGAAAGAATGTGGAGATAACGCGTTTTCTTCTTCCGGTTTTGTGGATTCCGGTGGGAACACGTCGGAAAAGGCCAGGGGGGTGTTTTCCGAGAATGATCTGGCTGACTTCAGTGGCGATAGCGAGAAGGATGCAGAGGGATCAGAAATGCCATTAGACCCTGCCGTTCCCCCTCGAAGTTCATCAAAACGAAGGAGAGCTGCGGAAGTTCATAATTTGTCAGAGAAGAGGAGGAGGAGCAGGATTAATGAGAAAATGAAAGCCCTACAGAATCTGATACCCAATTCTAACAAGACGGACAAGGCTTCAATGTTAGATGAAGCAATTGAATACTTGAAGCAGCTTCAGCTTCAAGTACAGATGTTATCCTTAAGAAATGGATTGAGTTTGTTCCCAATATGCTTACCAGAAGGCGTACTCCAGCCTCCTATGCAATTGCCTCATCTCGGAACGAGCTTTGATGCCAGAGGAGGACTAGCCTCATTTACTACTCCTCCTAATCAACACTATACGGTGCAATCTAATTTCAATCCTTCGGAAACCTCATTCCGCTTGGGACCATATGTTGATGCTCACTATGAACAGTTTAACCTCACTACATTTTCCAAGGAAAACTGCAAGGACGGGTCATCACCAAAACGGGAATCAGATAACGGGACAAGCCCGACGGCAGATGTTTCCTAG 1005 48.46 MADLYGAPPSSDPEDFSSFLNQLLHNSSSSSTSSPLCMSLKSKYPNLFNSQLLAQSPPPFSQRREFTAVFSEEDRARSAASSSAVTSTTASLSGVNFLDPGGYIPSDAKECGDNAFSSSGFVDSGGNTSEKARGVFSENDLADFSGDSEKDAEGSEMPLDPAVPPRSSSKRRRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSLRNGLSLFPICLPEGVLQPPMQLPHLGTSFDARGGLASFTTPPNQHYTVQSNFNPSETSFRLGPYVDAHYEQFNLTTFSKENCKDGSSPKRESDNGTSPTADVS 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9880700 9882803 + Conep07aG0140300.1 Cone7ag1362 441958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1362 334 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 14 307 IPR031066 GO:0005634(PANTHER)
Cone7ag1362 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 232 IPR036638 GO:0046983(InterPro)
Cone7ag1362 334 SMART finulus 179 228 IPR011598 GO:0046983(InterPro)
Cone7ag1362 334 MobiDBLite consensus disorder prediction 166 188 - -
Cone7ag1362 334 MobiDBLite consensus disorder prediction 119 134 - -
Cone7ag1362 334 FunFam Basic helix-loop-helix transcription factor 168 231 - -
Cone7ag1362 334 CDD bHLH_AtPIF_like 173 235 IPR047265 -
Cone7ag1362 334 MobiDBLite consensus disorder prediction 311 334 - -
Cone7ag1362 334 MobiDBLite consensus disorder prediction 119 188 - -
Cone7ag1362 334 Gene3D - 168 231 IPR036638 GO:0046983(InterPro)
Cone7ag1362 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983(InterPro)
Cone7ag1362 334 Coils Coil 212 232 - -
Cone7ag1362 334 Pfam Helix-loop-helix DNA-binding domain 176 223 IPR011598 GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1362 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1587 Cone-Chr4:12126308 Cone7ag1362 Cone-Chr7:9880700 1.04E-186 dispersed
Cone6ag0259 Cone-Chr6:1190014 Cone7ag1362 Cone-Chr7:9880700 4.84E-22 dispersed
Cone7ag1362 Cone-Chr7:9880700 Cone9ag0295 Cone-Chr9:1266883 4.21E-22 dispersed
Cone7ag1362 Cone-Chr7:9880700 Cone7ag1368 Cone-Chr7:9902948 2.06E-06 proximal
Cone17ag0851 Cone-Chr17:6760567 Cone7ag1362 Cone-Chr7:9880700 2.21E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g744 . . . . . . . . Cmo05g00172 Cmo12g00502 . . . Car12g00514 Sed10g1234 . Cpe07g00491 Bhi04g00369 Tan02g1798 Cmetu03g0637 . Hepe08g1296 . Lcy13g2092 . . . . . . . Cone4ag1587 Cone7ag1362 . . . . . Cme03g02063 Blo17g00875 . . . . . . Bma05g00041 . . . Cma12g00559 Cma05g00174 Car05g00147 . Cpe11g00143 . . . . . . . . . . . . . . . . Csa02g01934 Chy03g01556 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007940 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46553 PF00631 G-gamma 1.20E-06 No_clan Cone TF