Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1368 ATGGAGATGATGATGATGATGCAACAACAGATGGACAAAATCCCAGAATTCTGCAACTCGTACGATGACGCCAACGAATTTCAACCGTCAGATGATTTTTCCGGTGCAACCAATAGTAACACAACCGCTATACCGCATTGTCTCGAAACGCTCCAATCTACTTCACACTCCATGGTCATGATAAACTACCCATTCAATAGCCCATCTCACGATCACGACCATCCACGTGGACCAGTACCAGTCGTAGCACAAGACTTTCTATCCAACAACTCAAAGAACATGCAGCGGAACAGCTCCATGGCGGCCATGAGAGAGATGATATTCCGAATCGCGGCAATGCAGCCGATTCACATCGACCCGGAATCGGTAAAGCCACCAAAGAGGCGGAACGTGAGGATTTCAAAGGATCCGCAGAGCGTAGCGGCCAGGCATAGGAGAGAGAGGATAAGCGAGAGGATTAGAATACTGCAAAGGCTTGTGCCTGGAGGGACTAAAATGGATACAGCTTCCATGTTGGATGAAGCCATTCATTATGTTAAATTCTTGAAGACTCAAGTGCAGTCGTTGGAGAGGGCCTCGGCTAGTCGGCCGGCAGGTTCTTCAAATCCCGGGATTGGGTTGCCCGTGGCCATGTCTAGTGGTAGTAGCTGTTATCTTCCTGTGGCTAAAGCTACATCTATTAATTACCATGTTCGTCACTATGGCGATGCTTACCAGTAG 720 48.33 MEMMMMMQQQMDKIPEFCNSYDDANEFQPSDDFSGATNSNTTAIPHCLETLQSTSHSMVMINYPFNSPSHDHDHPRGPVPVVAQDFLSNNSKNMQRNSSMAAMREMIFRIAAMQPIHIDPESVKPPKRRNVRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERASASRPAGSSNPGIGLPVAMSSGSSCYLPVAKATSINYHVRHYGDAYQ 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9902948 9903667 + Conep07aG0140900.1 Cone7ag1368 441964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1368 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 192 IPR036638 GO:0046983(InterPro)
Cone7ag1368 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983(InterPro)
Cone7ag1368 239 SMART finulus 139 188 IPR011598 GO:0046983(InterPro)
Cone7ag1368 239 Gene3D - 132 198 IPR036638 GO:0046983(InterPro)
Cone7ag1368 239 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 38 202 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1368 239 Pfam Helix-loop-helix DNA-binding domain 142 183 IPR011598 GO:0046983(InterPro)
Cone7ag1368 239 CDD bHLH_AtIND_like 134 190 - -
Cone7ag1368 239 FunFam BHLH transcription factor 136 199 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0438 Cone-Chr3:2138257 Cone7ag1368 Cone-Chr7:9902948 3.58E-21 dispersed
Cone4ag0939 Cone-Chr4:7843864 Cone7ag1368 Cone-Chr7:9902948 4.91E-33 dispersed
Cone7ag1197 Cone-Chr7:8908009 Cone7ag1368 Cone-Chr7:9902948 8.11E-33 dispersed
Cone7ag1368 Cone-Chr7:9902948 Cone8ag0029 Cone-Chr8:191897 1.43E-36 dispersed
Cone7ag1362 Cone-Chr7:9880700 Cone7ag1368 Cone-Chr7:9902948 2.06E-06 proximal
Cone12ag0123 Cone-Chr12:659774 Cone7ag1368 Cone-Chr7:9902948 1.93E-56 wgd
Cone4ag1582 Cone-Chr4:12098263 Cone7ag1368 Cone-Chr7:9902948 1.45E-89 wgd
Cone7ag1368 Cone-Chr7:9902948 Cone8ag0130 Cone-Chr8:670288 5.03E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46555 PF00069 Pkinase 5.20E-48 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1368 - - - 0.0