Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1379 ATGAGACTTGGATCCTCAGTCGGTCTTTGTGCAAACAACCTTAATCTCTCTCTTTTTCACGCTGCTTTCAAATCCTATATCGAAAGGAAAACACCCGGATTTCCATTTCTCCTTTTCCGCCAGTTATTACAGTCTCCAGTGAAACCAAACGATCTCACTTTCTCCCTTCTCATTAAAGCCTGCGTTACTTCATCATCTTCCTCCTCTTCTACTTCTTCTCCATCTTTGAATCTATTCGAAGTAAATCAGCTTCGGAGTCACTTGATAAAATGCGGTGTTGATCGGTTTTTATACGTTAGTACTGCGCTTCTAGACTTTTATGCGAAATTCGGATGTATGAAAATTGCACGGAGTTTGTTCGACGAATTGCATGATAGAGATCTCGTATCGTGGAACGCATTGATTTGTGGGTATTCCCGAAATGGGTATGGTCGTGATGGGCTGCGACTCTTTATTCAGATGCGTAGGGAGGGGTTTAGTCCTCTTCAGACAACTCTGGTAAGTTTGCTTCCGTCCTGTGGTGGCTCCGAATTATCATTTCAAGGGAGATTAATTCATGGGTTTGGAATTAAGGCCGGCCTTGACTTGGCTTCTCAAGTAAAAAATGCATTCACCTCAATGTATGCTAAATGTGCAGATTTGGGTTCAGCGGAACTCTTATTTGGAGAAAATAATGAGAAGAGTGTAGTGTCCTGGAACACCATGATTGGAGCCTATGGCCAAAATGGGTTCTCTGATGAAGCAATACTTGTGTTCAAAGAAATGCTAGAGGAAAAGGTTGAAATTAACACAGTTACCATAGTGAGTATTCTCTCTTCAAACGCTGATCCAGAACTTATCCATTGTTATGCTTTCAAAATCGGCACCGTCAAGAATGATCCTGTAATTACTTCACTAATTTGCACATATGCAAAGTGTGGCAACTTAGGATCGGCAGAATGGCTTTACATGTCACTTCCCCAGAAAAATTTGGTTTCCTTCACTGCAATCATTTCGGGCCATGCTGCAAAGGGGAACATGGTATTGGTTGTGGACTGGTTTTCCCAAATGCAGAAGTCAAGTATGAAACTTGATGCAGTTGCTCTGGTTAGCATAATCCATGGGATTACAGATCCTTCCCATTTTAGCATTGGACTTGCTTTCCATGGATTTGGAATTAAGTGTGGATTGAGTAATGACTCTTTGGTTGCAAATGGGCTGATAAGTATTTACTCCAGGTTCGATGAAATTGAAGTAGCTTTCTCTTTGTTTTTTGAAATGCAAGAAAAGTCACTGATCAGCTGGAATTCCGTTATATCAGGTTGTGTACAGACAGGAAGATCGATTGAGGCCATGGACTTGTTTTGTAGAATGAAGATGTCTGGTCAAAACCCAGATGCCATTACTATTGCTAGTTTACTATCTGGGTGTTGCCAATTAGGGAACTTACACTTTGGGGAGAAACTCCATAGCTATACCCTCAGAAATAATTTACAAGTAGAAGACTATATTCAAACTGCTCTTATAGACATGTACACCAAGTGTGGAAGAATACAGCAAGCTGAGAGGGTGTTTAAGAGCATTACAAATCCATGCTTGGCTACATGGAATTCAATGATATCGGGCTACAGTCTATTTGGGTTGGAAACTAAAGCTCTCACTTGTTATACAGAAATGATAGAAAAGGGACTAAAACCCGACAAAATCACTTTCTTGGGAATACTAGCTGCTTGTACACATGGAGGTCTGGTTCATGAGGGAAGAAGGTACTTCAACCTTATGAAGGAAGAATTTGCCTTGGTGCCTGGATTGCAACATTGTGCTTGCATGGTTGGTTTGCTTGGTCGAGCCGGTATGTTTGAAGAGGCTATTGAGTGTATCAACAACATGGACATTGAACCTGATTCTGCTGTTTGGGGAGCTTTGCTTAGTGCTTGTTGTGTTCATGAGGAAGTTAGGCTTGGAGAATGCTTGGCTAAGAAATTACTCTTCTTGGATTACAGAAATGGGGGTTTTTTTGTGCTGATGTCAAATCTTTATGCGATTAATGGGAGGTGGGATGATGTGAAGAGAGTGAGGGAGATGATGAAAGAGAGTGGAGGGGATGGCTGTTCAGGAGTTAGCATCATTGAAGCTATATCTCTTGCTTGA 2130 41.36 MRLGSSVGLCANNLNLSLFHAAFKSYIERKTPGFPFLLFRQLLQSPVKPNDLTFSLLIKACVTSSSSSSSTSSPSLNLFEVNQLRSHLIKCGVDRFLYVSTALLDFYAKFGCMKIARSLFDELHDRDLVSWNALICGYSRNGYGRDGLRLFIQMRREGFSPLQTTLVSLLPSCGGSELSFQGRLIHGFGIKAGLDLASQVKNAFTSMYAKCADLGSAELLFGENNEKSVVSWNTMIGAYGQNGFSDEAILVFKEMLEEKVEINTVTIVSILSSNADPELIHCYAFKIGTVKNDPVITSLICTYAKCGNLGSAEWLYMSLPQKNLVSFTAIISGHAAKGNMVLVVDWFSQMQKSSMKLDAVALVSIIHGITDPSHFSIGLAFHGFGIKCGLSNDSLVANGLISIYSRFDEIEVAFSLFFEMQEKSLISWNSVISGCVQTGRSIEAMDLFCRMKMSGQNPDAITIASLLSGCCQLGNLHFGEKLHSYTLRNNLQVEDYIQTALIDMYTKCGRIQQAERVFKSITNPCLATWNSMISGYSLFGLETKALTCYTEMIEKGLKPDKITFLGILAACTHGGLVHEGRRYFNLMKEEFALVPGLQHCACMVGLLGRAGMFEEAIECINNMDIEPDSAVWGALLSACCVHEEVRLGECLAKKLLFLDYRNGGFFVLMSNLYAINGRWDDVKRVREMMKESGGDGCSGVSIIEAISLA 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9955548 9957677 + Conep07aG0142000.1 Cone7ag1379 441975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1379 709 Pfam PPR repeat family 228 272 IPR002885 -
Cone7ag1379 709 Pfam PPR repeat family 524 571 IPR002885 -
Cone7ag1379 709 Pfam PPR repeat family 425 472 IPR002885 -
Cone7ag1379 709 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Cone7ag1379 709 FunFam Pentatricopeptide repeat-containing protein 375 519 - -
Cone7ag1379 709 NCBIfam pentatricopeptide repeat 325 358 IPR002885 -
Cone7ag1379 709 NCBIfam pentatricopeptide repeat 129 161 IPR002885 -
Cone7ag1379 709 NCBIfam pentatricopeptide repeat 528 560 IPR002885 -
Cone7ag1379 709 NCBIfam pentatricopeptide repeat 230 263 IPR002885 -
Cone7ag1379 709 NCBIfam pentatricopeptide repeat 426 460 IPR002885 -
Cone7ag1379 709 FunFam Pentatricopeptide repeat (PPR-like) superfamily protein 279 374 - -
Cone7ag1379 709 Pfam E motif 642 704 IPR046848 -
Cone7ag1379 709 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 424 458 IPR002885 -
Cone7ag1379 709 Gene3D Tetratricopeptide repeat domain 190 279 IPR011990 GO:0005515(InterPro)
Cone7ag1379 709 Gene3D Tetratricopeptide repeat domain 380 480 IPR011990 GO:0005515(InterPro)
Cone7ag1379 709 Gene3D Tetratricopeptide repeat domain 280 375 IPR011990 GO:0005515(InterPro)
Cone7ag1379 709 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Cone7ag1379 709 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 161 273 IPR050421 -
Cone7ag1379 709 FunFam Pentatricopeptide repeat-containing protein At3g58590 81 179 - -
Cone7ag1379 709 Pfam PPR repeat 101 127 IPR002885 -
Cone7ag1379 709 Pfam PPR repeat 499 520 IPR002885 -
Cone7ag1379 709 Pfam PPR repeat 398 424 IPR002885 -
Cone7ag1379 709 Pfam PPR repeat 129 159 IPR002885 -
Cone7ag1379 709 Pfam PPR repeat 325 353 IPR002885 -
Cone7ag1379 709 Pfam PPR repeat 297 323 IPR002885 -
Cone7ag1379 709 Pfam PPR repeat 602 623 IPR002885 -
Cone7ag1379 709 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Cone7ag1379 709 FunFam Pentatricopeptide repeat-containing protein At3g13880 183 278 - -
Cone7ag1379 709 FunFam Pentatricopeptide repeat-containing protein At4g02750 520 707 - -
Cone7ag1379 709 Gene3D Tetratricopeptide repeat domain 481 706 IPR011990 GO:0005515(InterPro)
Cone7ag1379 709 Gene3D Tetratricopeptide repeat domain 24 184 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1379 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1573 Cone-Chr4:12052228 Cone7ag1379 Cone-Chr7:9955548 8.77E-203 dispersed
Cone7ag1379 Cone-Chr7:9955548 Cone13ag0018 Cone-Chr13:114829 2.75E-131 dispersed
Cone12ag0104 Cone-Chr12:550156 Cone7ag1379 Cone-Chr7:9955548 5.60E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g768 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1573 Cone7ag1379 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013988 0 1 0 0 0 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 22