Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1392 ATGCAGAACAACGGCACTGATCCGCAGACACAGGAGCAGAATCAACGGCAACAGCAGCCGCAGGCACAGCCGCCTCCGCCTCCGCCACCGCCGCAACCTCAACAATGGATGGCGATGCAGTATCCTCCGCCACGAGCGGCGATGGTAATGCCCCATCAGATGATGCCGCCTCAGCATTACGTCCCTCCTCCGCCGCCTTTCATGCCGTACCATCATCAGTACCAGCACCACCACGTACAACAACACGCTCATCAGCAACAAGGATCTAGCGGCGGAGAGAACAAGACGATTTGGGTGGGAGATTTGCACCCTTGGATGGATGAGAGTTACCTTCATAGTTGCTTCGCTTCAGCTGGAGAGATTGCCTCCCTCAAGGTTATTCGCAATAAGCAAACTGGAATATCGGAATGCTATGGATTTGTTGAATTCTTTTCCCACACAACAGCTGAGAAAGTTCTTCAGAACTATGCTGGCATGTTTATGCCAAATACAGAGCAGCCTTTCCGTCTGAACTGGGCTTCCCTTAGTACAGGGGATAAGCGCTCGGATAATGGTCCAGATCTTTCTATATTTGTAGGAGACTTAACAGCAGATGTTACTGATAGTTTATTGCATGAAACTTTTGCTAGTAAATATCCCTCCGTTAAGGCTGCAAAAGTTGTCTTTGATGCTAACACTGGTCGTTCCAAAGGTTATGGTTTTGTAAGGTTTGGGGATGATAATGAGAGGTCACAGGCTATGACCGAAATGAACGGTGTGTATTGCTCAAGCAGAGCTATGCGCATAGGTGCAGCTACGCCCAGAAAGTCCTCTGCTTATCAGCAACAATATTCTACTCAAGTAGGAGGATATTCATCAAATGGTTCCTTTGCACAAGGCTTCCAATCCGAAGGGGATTCTACAAACACTACAATATTTGTTGGGGGGCTTGATTCTAATGCTACTGATGAAGATCTTAGGCAGCCTTTCTCCCAGCACGGTGAAATAGTCTCTGTTAAGATACCTGTTGGGAAAGGATGTGGGTTTGTTCAATTCGCCAACAGAAGTAATGCTGAGGAGGCTTTGCAGAAATTAAATGGAACTATGATTAGGAAGCAAACTGTTCGGCTCTCATGGGGCCGAAATCCAGCAAATAAGCAGTTCCGGGCCGATTATGGAAACCAATGGAACAGCCCCTATTATGGAGGGCAGGTCTATGATGGATACGGATATGCTCTGCCTCCTCCTCATGATCCAACCATATACGCCACTGCTTATGGAGCTTACCCTGTTTATGGCACCCATCAACAACAAGTAAGCTGA 1302 47.62 MQNNGTDPQTQEQNQRQQQPQAQPPPPPPPPQPQQWMAMQYPPPRAAMVMPHQMMPPQHYVPPPPPFMPYHHQYQHHHVQQHAHQQQGSSGGENKTIWVGDLHPWMDESYLHSCFASAGEIASLKVIRNKQTGISECYGFVEFFSHTTAEKVLQNYAGMFMPNTEQPFRLNWASLSTGDKRSDNGPDLSIFVGDLTADVTDSLLHETFASKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRAMRIGAATPRKSSAYQQQYSTQVGGYSSNGSFAQGFQSEGDSTNTTIFVGGLDSNATDEDLRQPFSQHGEIVSVKIPVGKGCGFVQFANRSNAEEALQKLNGTMIRKQTVRLSWGRNPANKQFRADYGNQWNSPYYGGQVYDGYGYALPPPHDPTIYATAYGAYPVYGTHQQQVS 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9994572 9998106 + Conep07aG0143300.1 Cone7ag1392 441988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1392 433 CDD RRM2_SECp43_like 187 266 - -
Cone7ag1392 433 Pfam RNA recognition motif 97 164 IPR000504 GO:0003723(InterPro)
Cone7ag1392 433 Pfam RNA recognition motif 305 368 IPR000504 GO:0003723(InterPro)
Cone7ag1392 433 Pfam RNA recognition motif 190 259 IPR000504 GO:0003723(InterPro)
Cone7ag1392 433 CDD RRM1_SECp43_like 96 174 - -
Cone7ag1392 433 FunFam Polyadenylate-binding protein RBP47B 94 174 - -
Cone7ag1392 433 MobiDBLite consensus disorder prediction 1 38 - -
Cone7ag1392 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 175 IPR000504 GO:0003723(InterPro)
Cone7ag1392 433 Gene3D - 68 186 IPR012677 -
Cone7ag1392 433 SUPERFAMILY RNA-binding domain, RBD 67 177 IPR035979 GO:0003676(InterPro)
Cone7ag1392 433 SUPERFAMILY RNA-binding domain, RBD 295 403 IPR035979 GO:0003676(InterPro)
Cone7ag1392 433 MobiDBLite consensus disorder prediction 1 19 - -
Cone7ag1392 433 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 66 376 IPR050825 GO:0003729(PANTHER)|GO:0003729(InterPro)|GO:0005829(PANTHER)
Cone7ag1392 433 MobiDBLite consensus disorder prediction 20 38 - -
Cone7ag1392 433 SMART rrm1_1 189 263 IPR000504 GO:0003723(InterPro)
Cone7ag1392 433 SMART rrm1_1 304 371 IPR000504 GO:0003723(InterPro)
Cone7ag1392 433 SMART rrm1_1 96 171 IPR000504 GO:0003723(InterPro)
Cone7ag1392 433 FunFam Polyadenylate-binding protein RBP47 285 405 - -
Cone7ag1392 433 SUPERFAMILY RNA-binding domain, RBD 171 294 IPR035979 GO:0003676(InterPro)
Cone7ag1392 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 267 IPR000504 GO:0003723(InterPro)
Cone7ag1392 433 FunFam Polyadenylate-binding protein RBP47B 176 278 - -
Cone7ag1392 433 CDD RRM3_NGR1_NAM8_like 302 373 - -
Cone7ag1392 433 Gene3D - 187 263 IPR012677 -
Cone7ag1392 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 375 IPR000504 GO:0003723(InterPro)
Cone7ag1392 433 Gene3D - 287 382 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1392 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1674 Cone-Chr6:12719781 Cone7ag1392 Cone-Chr7:9994572 6.94E-07 dispersed
Cone7ag0798 Cone-Chr7:5684175 Cone7ag1392 Cone-Chr7:9994572 1.31E-06 dispersed
Cone7ag1392 Cone-Chr7:9994572 Cone9ag0078 Cone-Chr9:347050 6.76E-122 dispersed
Cone12ag1105 Cone-Chr12:8978982 Cone7ag1392 Cone-Chr7:9994572 1.94E-147 wgd
Cone4ag1559 Cone-Chr4:11979327 Cone7ag1392 Cone-Chr7:9994572 4.72E-236 wgd
Cone7ag1392 Cone-Chr7:9994572 Cone8ag1145 Cone-Chr8:10021954 4.74E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117