Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1405 ATGCTGCTCGGTTCATCGCGAAGTGGATCAGCTGGAAACGGGTCTCGTGAGAAGATGTTGAATGCGAGACGGCCTTGCTTCTACACCTTTTATTCATCTACCCTGAGCTCAGAAACACTGAAACTTCCCGTCAGATTTCTCCGCCACTTGAAAGAACATACCTACGGATTAGTTTCATTAATTGGTCCGAGCGGGCACACTTGGTATGTTGACTTAATCCAGCAGAATGATGAACTGTACTTGACTCACGGGTGGCCGATCTTTGTCAGAGATCATTTCCTAGAATGTGGAGACTTTTTGGTTTTTAGATACGATGGTGAACTGCAGTTTGTTGTGCAAGTTTTCGATCAAAGTGCGTGTGAGAAAGAAGCTGCTTTTAATTCTCAATGCAGTCAAGATCATAGAGATGTTAATAAGCATGTAGGACACAAAAGAGAAAGGGAGGAGTATGCTTCCTCTTCGGATGCATGTATTGAATCCATGGCCAAGAAAACGAGCCCCATTTCTGAAGCTGATTTGGAATGCATGGAGAAAAATCAAGAGCACAGATTAGTTATATCTGGTGAGGGAGGATGCCAAGAAGATAGTCCTAACTTGCAAGATAAATTTTGTCTTCCAATGCTATCCACACATGATGAAAGAGAAGTAGCTCGGGGTTTCACTTCTGATTTCCCATATTTTGTCAGAACCATGAAAAGTTTCAATATCAGTGGTTCATATACTCTGAATATCCCGTACAAATTTTCAATGGCACATCTTCCTAACAGTAAAGTCAAGATTTTTCTACGTAATTTCAAAGGGGAAAGTTGGACTGTGAATTCTGTCCCAGCAACACGAGTGAACACAAGTCATACTCTGTGTGGAGGATGGATGGCCTTTGTCCGTGGAAATGACATCAGAATGGGAGATATATGCATCTTTGAACTAATCCGTGAGTGTGAATTACATGTTCACATCCTTGGGTTTGGAAAGCAACAATCTGAGTGCCAAGGAGTGAAAGGAATCTCTAGCAGGCTACTCGTTTCCCACAAGACCTTCAAAGATAAGTTGAAGAAAATGGTGGGTAACTCATCAATGGCTGGCTCGAAAAAGTTTGAAGTGCCTGATAAAAAAGGTTCAAGGACCCTGTGGGATTCTGCTTACTCTAATGGTATAAGGAAACATCGTAGTGTAACCAAGGCCTCTAATAAAACTGCAGTTTGCTCTCAGTCAAATCGTTCCTCTAAAAGTTTGGTCATTCACCGAAGCAGTGTCAATGACAATCTTGGGTCTAAACAAGGTTTGAGAATGATGTTAGCACTTGATGAGGAAAGAGCAGCTAGATCTTTTACTTCTTGCTTTCCTAGTTTTGTCAGGATCATGAAAAGGTTCAACGTATGTGGTTCATATACTCTGAAAATACCGCATCAGTTTTCAACGGCGCATCTTCCAGACAGCAAAGCTGAGATTGTTCTTCGAAACCAAAACGGTAAATGTTGGACAGTGAACTCTGTTCCGGACTCGAAAGGGAGAATGGTACATACATTTTGTGGGGGTTGGGGGGCGTTTGTTCGGGATAATGATGTCAAGATTGGAGATATCTGCATTTTCGAGCTTGTTGCCAAGCGTGAAATGCGAGTACATGCATCCGGTGTTGGAAGAACAGGGCTTACTGATAATAGTGAGGGCAATCAAGAAGTAATGTGCAATGATTTAGCCCTTGTACCCGTCGACTAG 1716 42.31 MLLGSSRSGSAGNGSREKMLNARRPCFYTFYSSTLSSETLKLPVRFLRHLKEHTYGLVSLIGPSGHTWYVDLIQQNDELYLTHGWPIFVRDHFLECGDFLVFRYDGELQFVVQVFDQSACEKEAAFNSQCSQDHRDVNKHVGHKREREEYASSSDACIESMAKKTSPISEADLECMEKNQEHRLVISGEGGCQEDSPNLQDKFCLPMLSTHDEREVARGFTSDFPYFVRTMKSFNISGSYTLNIPYKFSMAHLPNSKVKIFLRNFKGESWTVNSVPATRVNTSHTLCGGWMAFVRGNDIRMGDICIFELIRECELHVHILGFGKQQSECQGVKGISSRLLVSHKTFKDKLKKMVGNSSMAGSKKFEVPDKKGSRTLWDSAYSNGIRKHRSVTKASNKTAVCSQSNRSSKSLVIHRSSVNDNLGSKQGLRMMLALDEERAARSFTSCFPSFVRIMKRFNVCGSYTLKIPHQFSTAHLPDSKAEIVLRNQNGKCWTVNSVPDSKGRMVHTFCGGWGAFVRDNDVKIGDICIFELVAKREMRVHASGVGRTGLTDNSEGNQEVMCNDLALVPVD 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10056379 10059247 + Conep07aG0144700.1 Cone7ag1405 442001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1405 571 CDD B3_DNA 32 116 IPR003340 GO:0003677(InterPro)
Cone7ag1405 571 Gene3D - 18 120 IPR015300 -
Cone7ag1405 571 ProSiteProfiles B3 DNA-binding domain profile. 227 323 IPR003340 GO:0003677(InterPro)
Cone7ag1405 571 SUPERFAMILY DNA-binding pseudobarrel domain 27 123 IPR015300 -
Cone7ag1405 571 SMART B3_2 227 323 IPR003340 GO:0003677(InterPro)
Cone7ag1405 571 SMART B3_2 450 546 IPR003340 GO:0003677(InterPro)
Cone7ag1405 571 SMART B3_2 26 118 IPR003340 GO:0003677(InterPro)
Cone7ag1405 571 Gene3D - 209 322 IPR015300 -
Cone7ag1405 571 Gene3D - 432 545 IPR015300 -
Cone7ag1405 571 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 42 323 IPR044837 -
Cone7ag1405 571 ProSiteProfiles B3 DNA-binding domain profile. 450 546 IPR003340 GO:0003677(InterPro)
Cone7ag1405 571 SUPERFAMILY DNA-binding pseudobarrel domain 443 543 IPR015300 -
Cone7ag1405 571 CDD B3_DNA 225 320 IPR003340 GO:0003677(InterPro)
Cone7ag1405 571 SUPERFAMILY DNA-binding pseudobarrel domain 221 321 IPR015300 -
Cone7ag1405 571 CDD B3_DNA 448 541 IPR003340 GO:0003677(InterPro)
Cone7ag1405 571 ProSiteProfiles B3 DNA-binding domain profile. 25 118 IPR003340 GO:0003677(InterPro)
Cone7ag1405 571 Pfam B3 DNA binding domain 229 319 IPR003340 GO:0003677(InterPro)
Cone7ag1405 571 Pfam B3 DNA binding domain 32 117 IPR003340 GO:0003677(InterPro)
Cone7ag1405 571 Pfam B3 DNA binding domain 450 540 IPR003340 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1405 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1307 Cone-Chr17:9301657 Cone7ag1405 Cone-Chr7:10056379 3.43E-19 dispersed
Cone4ag1546 Cone-Chr4:11918689 Cone7ag1405 Cone-Chr7:10056379 4.92E-176 dispersed
Cone7ag1405 Cone-Chr7:10056379 Cone9ag1300 Cone-Chr9:9763850 4.07E-15 dispersed
Cone20ag0165 Cone-Chr20:714756 Cone7ag1405 Cone-Chr7:10056379 1.59E-17 wgd
Cone4ag1545 Cone-Chr4:11918241 Cone7ag1405 Cone-Chr7:10056379 8.19E-59 wgd
Cone6ag1367 Cone-Chr6:10960761 Cone7ag1405 Cone-Chr7:10056379 1.02E-06 wgd
Cone7ag1405 Cone-Chr7:10056379 Cone9ag1297 Cone-Chr9:9742538 2.51E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g838 . Blo12g00937 . Bda03g00232 . Bpe04g00197 Bma04g00184 . . . Cma01g01876 Cma09g00197 Car01g01462 Car12g00479 . Cpe06g00134 Cpe07g00453 . . . . . . . . . . . . . . Cone4ag1546 Cone7ag1405 . . Lsi04g01605 Csa03g04152 Chy04g00568 . . . . . . . . . . Cmo01g01934 Cmo09g00192 Cma12g00508 . . Car09g00166 . Cpe02g00152 Bhi09g02026 . . . . . . Cla05g01994 Cam05g2144 Cec05g2160 Cco05g2207 Clacu05g2135 Cmu05g2008 Cre05g2133 . Csa02g02009 . Cme04g00679
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006500 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 0 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46558 PF13917 zf-CCHC_3 9.00E-07 CL0511 Cone TF