Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1407 ATGATCATGAGCTCAAACCCTATAATGAATCTCTCCTTACAAATCAGTCCACCTATATCTTGTCCAGATTATAATCTTGTAAATGGGTCTAGCTCCACTACTACAGAATCTGGAAGCAGTAGCACTGGAAGTGATTTAAGCCGCGATCAAAATAGTATGCATTTCTTCAATTCTGGTATCGCTTATAATGCTGATGAAATGCCCGTTGGAAAGTTTAGTAACAGTCGTCATCATCATCATCATCTTCACCATGTACAACCTAAAATCTACGGCCGGGATTTCAAGAGGATTAGCAGTGGTCATTTGAAGAGAAGCGTACGAGCTCCACGAATGAGATGGACGACTACCCTTCATTCACATTTTGTTCACGCCGTTCAGCTCCTAGGAGGCCATGAAAGGGCAACGCCAAAATCAGTGTTGGAGCTCATGAATGTAAAGGATCTAACCCTAGCTCACGTGAAGAGTCACCTGCAGATGTACAGAACAGTGAAGAGCACTGACAAGGGAACAGGTCAAGGGCAGCTTGATATGCGGTTGAACCAAGAGATAGTATCCCCTCATGATCATCTCAAGTTAGATGCAGTAACATTACCTAACTGTGAGAGAACACAGAGGGTTTCTTTGTCATCATCATTAATGGCGACGAACGGTGCCCAAAATGCTCTGACATATGTCAGGACCAATAATGCAGCCAAGGTGGGGCCGTGGAATAGCGTGAAGGAGAGGGTGGATTCGAGCTCCTTGTCATCGTCCTCATCAGACCACACCGATCTTAATTTAGAGTTCACCCTCGGGAGGCCAAGCTGGCAATTAATCGACTATGCTGACTCATGA 834 44.96 MIMSSNPIMNLSLQISPPISCPDYNLVNGSSSTTTESGSSSTGSDLSRDQNSMHFFNSGIAYNADEMPVGKFSNSRHHHHHLHHVQPKIYGRDFKRISSGHLKRSVRAPRMRWTTTLHSHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGTGQGQLDMRLNQEIVSPHDHLKLDAVTLPNCERTQRVSLSSSLMATNGAQNALTYVRTNNAAKVGPWNSVKERVDSSSLSSSSSDHTDLNLEFTLGRPSWQLIDYADS 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10066318 10068297 + Conep07aG0144900.1 Cone7ag1407 442003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1407 277 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 3 270 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
Cone7ag1407 277 MobiDBLite consensus disorder prediction 26 49 - -
Cone7ag1407 277 Gene3D - 108 165 - -
Cone7ag1407 277 Pfam Myb-like DNA-binding domain 110 161 IPR001005 -
Cone7ag1407 277 NCBIfam myb-like DNA-binding domain, SHAQKYF class 109 162 IPR006447 GO:0003677(InterPro)
Cone7ag1407 277 SUPERFAMILY Homeodomain-like 106 163 IPR009057 -
Cone7ag1407 277 FunFam Myb family transcription factor 107 165 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0186 Cone-Chr5:765604 Cone7ag1407 Cone-Chr7:10066318 2.63E-19 dispersed
Cone7ag1407 Cone-Chr7:10066318 Cone8ag0489 Cone-Chr8:3447685 5.21E-33 dispersed
Cone20ag0163 Cone-Chr20:708742 Cone7ag1407 Cone-Chr7:10066318 7.31E-45 wgd
Cone4ag1544 Cone-Chr4:11912283 Cone7ag1407 Cone-Chr7:10066318 9.42E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46560 PF13639 zf-RING_2 1.10E-12 CL0229 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1407 - - - 0.0